Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00550 ATGGGCCTCTGCTTCTCCTCTATTAAAGTGAATGGCTCAAATAGCAACAACACAAATACCAGCGCCGGTGGGGTTCAGAATCGCAGGGCACAAAATAAGGCACGGGCATCGGCATCGGCATCGGCATCAACGAACAAACAAGACAATCAAGGACGTAAGAAAAATAATGATTCACACAAACCTCAGCTTCAGCTGCAGCTGCAGCATCTGCATACCCAACACAAGAATCCCACCACTCAACATCATAATAAAGAGAGGCCTATTTCTAGGCGACCCTGTGGGATTATACCATGTGGAAAGCGCACTGATTTTGGGTATGACAAAGATTTTGATAAACGTTATACTCTTGGAAAATTGTTGGGACATGGGCAATTTGGATATACCTATGTTGCGACCGATAAAGCAAATGGTGATCGAGTTGCGGTGAAGAGAATTGATAAAAGCAAGATGGTTCATGCTATTGCAGTTGAGGATGTCAAGCGAGAGGTCAAGATATTGCGAGAACTCACGGGGCATGAGAATGTAGTTCAGTTTTATAATGCATTTGAGGATGATTCTTATGTTTACATAGTCATGGAGTTATGTGAGGGTGGGGAGTTGCTGGACCGGATATTGGCCAAGAAGGATAGTCGTTACAGTGAGAAGGATGCTGCAGTTATCGTACGGCAGATGCTCAAGGTTGCAGCAGAATGTCATTTACATGGTTTGGTGCATCGGGACATGAAACCTGAGAATTTTCTTTTTAAATCAGTTGGAGAAAACTCACCCCTGAAGGCTACAGACTTTGGTTTGTCCGACTTCATAAAGCCTGGAAAAAGGTTTCAAGATATTGTTGGCAGTGCTTATTATGTTGCTCCTGAAGTATTAAAACGCAAGTCAGGACCTGAATCAGATGTTTGGAGTATTGGTGTCATAACCTATATATTGCTTTGTGGCAGACGGCCATTTTGGGACAAGACTGAAGATGGTATTTTCAGGGAGGTCTTAAGGAACAAGCCTGATTTTCGCCGTAAGCCATGGTCGAGTATAAGCAACAGTGGCAAAGATTTTGTGAAGAAATTACTTGTAAAGGACCATCGAGCAAGATTAACAGCTGCTCAAGCTCTTTCTCACCCTTGGGTTAGAGAAGGTGGAAATGCATCAGAAATTCCCATTGACATATCTGTCCTGAATAACATGCGGCAATTTGTGAAGTATAGTCGTTTGAAACAATTTGCACTGAGGGCATTGGCTAGTACACTTAATGAAGAAGAGTTAGCTGATCTGAAAGATCAATTTGATGCTATAGATGTAGATAAAAACGGTTCTATCAGCTTGGAGGAAATGAGACATGCTTTGGCTAAAGATCTCCCTTGGAAGTTGAAAGAGTCACGTGTCCTAGAGATTTTACAAGCTATAGACATCAATACAGATGGGCTAGTTGATTTTCACGAGTTTGTTGCAGCTACGTTGCATGTGCATCAAATGGAGGAACATGATTCTGACAAGTGGCGCCAGCGTTCACAGGCTGCTTTTGAGAAATTTGACATAGACAAGGATGGATATATTACACCCGAAGAACTTAGAATGCACACAGGCTTGCGGGGTTCCATTGATCCACTACTCGAAGAAGCTGATATTAAAGATGGAAGGATAAGCCTCTCAGAATTCCGTAGGCTTCTGCGAACTGCTAGCATTAGTTCCCGTGTTACAACCCCAAGGGGCACCCGTCCAGTAGGGAGCTAA 1725 0.4313 MGLCFSSIKVNGSNSNNTNTSAGGVQNRRAQNKARASASASASTNKQDNQGRKKNNDSHKPQLQLQLQHLHTQHKNPTTQHHNKERPISRRPCGIIPCGKRTDFGYDKDFDKRYTLGKLLGHGQFGYTYVATDKANGDRVAVKRIDKSKMVHAIAVEDVKREVKILRELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYSEKDAAVIVRQMLKVAAECHLHGLVHRDMKPENFLFKSVGENSPLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFREVLRNKPDFRRKPWSSISNSGKDFVKKLLVKDHRARLTAAQALSHPWVREGGNASEIPIDISVLNNMRQFVKYSRLKQFALRALASTLNEEELADLKDQFDAIDVDKNGSISLEEMRHALAKDLPWKLKESRVLEILQAIDINTDGLVDFHEFVAATLHVHQMEEHDSDKWRQRSQAAFEKFDIDKDGYITPEELRMHTGLRGSIDPLLEEADIKDGRISLSEFRRLLRTASISSRVTTPRGTRPVGS* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00550 574 Pfam Protein kinase domain 114 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00550 574 CDD STKc_CAMK 113 373 - -
Pte12g00550 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 236 248 IPR008271 GO:0004672|GO:0006468
Pte12g00550 574 SMART serkin_6 114 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00550 574 FunFam calcium-dependent protein kinase 28-like 200 393 - -
Pte12g00550 574 ProSitePatterns EF-hand calcium-binding domain. 509 521 IPR018247 -
Pte12g00550 574 Pfam EF-hand domain pair 421 483 IPR002048 GO:0005509
Pte12g00550 574 Gene3D - 415 484 - -
Pte12g00550 574 SUPERFAMILY EF-hand 403 556 IPR011992 -
Pte12g00550 574 FunFam CDPK-related kinase 1 107 199 - -
Pte12g00550 574 MobiDBLite consensus disorder prediction 60 74 - -
Pte12g00550 574 ProSitePatterns EF-hand calcium-binding domain. 467 479 IPR018247 -
Pte12g00550 574 Gene3D - 391 553 - -
Pte12g00550 574 Gene3D Transferase(Phosphotransferase) domain 1 200 381 - -
Pte12g00550 574 ProSitePatterns EF-hand calcium-binding domain. 430 442 IPR018247 -
Pte12g00550 574 SUPERFAMILY Protein kinase-like (PK-like) 111 375 IPR011009 -
Pte12g00550 574 ProSiteProfiles EF-hand calcium-binding domain profile. 496 531 IPR002048 GO:0005509
Pte12g00550 574 MobiDBLite consensus disorder prediction 11 94 - -
Pte12g00550 574 FunFam Calcium-dependent protein kinase 28 415 484 - -
Pte12g00550 574 MobiDBLite consensus disorder prediction 11 49 - -
Pte12g00550 574 ProSiteProfiles EF-hand calcium-binding domain profile. 454 489 IPR002048 GO:0005509
Pte12g00550 574 Gene3D Phosphorylase Kinase; domain 1 107 199 - -
Pte12g00550 574 Pfam EF hand 503 522 IPR002048 GO:0005509
Pte12g00550 574 PANTHER SERINE/THREONINE-PROTEIN KINASE 90 535 - -
Pte12g00550 574 CDD EFh 502 555 IPR002048 GO:0005509
Pte12g00550 574 ProSiteProfiles Protein kinase domain profile. 114 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00550 574 SMART efh_1 530 557 IPR002048 GO:0005509
Pte12g00550 574 SMART efh_1 500 528 IPR002048 GO:0005509
Pte12g00550 574 SMART efh_1 421 449 IPR002048 GO:0005509
Pte12g00550 574 SMART efh_1 458 486 IPR002048 GO:0005509
Pte12g00550 574 CDD EFh 421 482 IPR002048 GO:0005509
Pte12g00550 574 ProSitePatterns Protein kinases ATP-binding region signature. 120 143 IPR017441 GO:0005524
Pte12g00550 574 ProSiteProfiles EF-hand calcium-binding domain profile. 417 452 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00550 Pte-Chr12 4917764 4922298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00550 1 568 EF-hand Containing Proteins AT2G17890 75.260 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Pte12g00550 Pkinase 2.7e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00550 K13412 - mnt:21409324 897.116