Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00549 ATGGTTGGCGGTGTGCCTGTTGATTCAGAGTTAGCTCCTTGTTCTGCTACACTTCATTCTGTATCTCAGCCTCTAACCGCTCCCACTCCTTCTAATCGTTCACTAAACGATAGCAGGCAGAAACATGAAGGAGAATTGCAAGATGCCATTGCAGCCAGGAAAGTTCAGAAGGCAGATCGTGAGAAGCTTAGGAGGGATCGCTTAAATGAACAGTTTACTGAGTTGGGAAGCGTCTTAGATCCCGATAGGCCCAAGAATGACAAGGCAACCATCCTTACAGATACTATTCAAGTACTGAAAGATTTGAGTGCTGAAGTCAACAGACTAAAGGCTGAGTATGCAACACTTTCTGAAGAATCTCGAGAGGTAAGATACTCCGATTGCTTTGGTCATGAAAAAAATATTGATCTTATATTATCGCTTCCATTTTGTGATGGACAGTTAACGCAAGAGAAAAATGAACTCAGAGAAGAGAAAGCATCCTTAAAAGCCGATACTGAAAATCTTAATGCCCAATATCAGCAAAGACTCAGAACTATGTTCCCATGGGCTGCCATGGACCACTCTGTTGTCCTTGGTCCGACTTACTCATATCCAGTCCCCATACCAGTTCCTTCAGGTCCAATTCCCATACACCCATCCGTGCAGCCATTTTCATTCTATGGGAACCAAAACCCTGGTCCCATTACAACTTATGTCCCATATGCAGCTCCTGCTAATCCCCCAGTTGAGCAATCATCTGCACACCATGCATCCGCTTCACATGTATCAAGCAGGCACGACGCTAAAAGCAGATTGTCAAGTCATCAAAGATGCTGTAATGCTGAAACCTGCGATGAATCTGAGGATGTTGCTACTGAGCTGGAGCTCAAAATGCCTGGATCATCAGCACAACAGGATTCATCTTCTATAGGAAGGAAGGGTAAGCAATCGTCAAGAAAAAATAGAAATACTGACGATGGAAACAGTTCAAGTAGGTATTCTTCATCTCAAGGTCTCCCAGATAGCTCCTCCAACAGTGTAGGTGACGTCCCCAAGGCTAAAAAGTGA 1050 0.4419 MVGGVPVDSELAPCSATLHSVSQPLTAPTPSNRSLNDSRQKHEGELQDAIAARKVQKADREKLRRDRLNEQFTELGSVLDPDRPKNDKATILTDTIQVLKDLSAEVNRLKAEYATLSEESREVRYSDCFGHEKNIDLILSLPFCDGQLTQEKNELREEKASLKADTENLNAQYQQRLRTMFPWAAMDHSVVLGPTYSYPVPIPVPSGPIPIHPSVQPFSFYGNQNPGPITTYVPYAAPANPPVEQSSAHHASASHVSSRHDAKSRLSSHQRCCNAETCDESEDVATELELKMPGSSAQQDSSSIGRKGKQSSRKNRNTDDGNSSSRYSSSQGLPDSSSNSVGDVPKAKK* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00549 349 PANTHER TRANSCRIPTION FACTOR BHLH121 147 347 IPR044579 GO:0003700|GO:0006879
Pte12g00549 349 Coils Coil 92 119 - -
Pte12g00549 349 Pfam Helix-loop-helix DNA-binding domain 53 102 IPR011598 GO:0046983
Pte12g00549 349 MobiDBLite consensus disorder prediction 321 343 - -
Pte12g00549 349 MobiDBLite consensus disorder prediction 240 263 - -
Pte12g00549 349 CDD bHLH_AtILR3_like 57 156 - -
Pte12g00549 349 SMART finulus 58 108 IPR011598 GO:0046983
Pte12g00549 349 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 53 120 IPR036638 GO:0046983
Pte12g00549 349 MobiDBLite consensus disorder prediction 292 308 - -
Pte12g00549 349 Coils Coil 46 71 - -
Pte12g00549 349 Gene3D - 50 126 IPR036638 GO:0046983
Pte12g00549 349 MobiDBLite consensus disorder prediction 291 349 - -
Pte12g00549 349 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 102 IPR011598 GO:0046983
Pte12g00549 349 MobiDBLite consensus disorder prediction 16 35 - -
Pte12g00549 349 Coils Coil 145 172 - -
Pte12g00549 349 MobiDBLite consensus disorder prediction 16 47 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00549 Pte-Chr12 4913181 4916755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00549 43 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 50.000 2.51e-75 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte12g00549 HLH 1.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00549 - - jre:109020205 374.4