Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00546 ATGGCGGACATCGTTAAACAAATCTTGGCAAAGCCGATCCATCTTGCTGACCAAGTGATTAAGGCGGCTGATGAAGCAAACTCTTCATTCAAACAAGAATGTGCTGAAATCAAATCCAAAACCGAGAAGCTAGCAGGGCTTCTCCGGCAAGCTGCGAGGGCAAGTTCTGAACTTTACGAGCGCCCAGCTCGTCGAATCATTGATGACACCGGGCAAGCGCTTGATAAGGCTATGTCACTTATGCTCAAGTGCCGAGGCAGTAGTCTGATGAAGCGAGTTTTCACTATTATTCCTGCTGCTGTGTTTAGGAAGATGTCTTCTCAGCTTGAGAATTCAATCGGCGACGTGTCTTGGTTGCTCCGGGTATCTGCTCCGGCCGATGGTCGCGATGACGAATATCTGGGTCTTCCTCCTATTGCGGCGAATGAACCTATTCTGTGTTTGATATGGGAGCAGATTGCAATTCTTTATACTGGGTCAGTGGAGGACCGATCTGATGCGGCGGCTTCACTGGTTTCGCTTGCCAGGGACAACGATCGGTATGGAAAGCTTATTATTGAAGAAGGTGGGGTTGGTCCTTTGTTGAAATTGATGAAAGAGGGTAAGATGGAAGGTCAAGAAAACGCAGCAAGAGCAATTGGACTTCTGGGACGAGACCCTGAAAGTGTTGAGTACATGATTCATGCTGGTGTTTGCTCTGTGTTTGCGAAAATGCTCAAGGAAGGTCCAATGAAAGTCCAAGCAGTGGTGGCTTGGGCTGTGTCAGAGCTCGTGGCAAATAACCCAAAATGCCAAGATCTTTTTGCTCAGCATAATATTGTTCGATTGCTTGTTGGCCATCTTGCATTCGAAACTGTTCAGGAACATGATAAGTACTCCATCGCTAGCATCAAAGCTACATCACTTCATGCTTTGGTAATGGCCAGTAACAATCTTAATGTTCAAACTACTAAGAATGCAAGTGAAGACGAGGATAAACAATATCAGAGTCAAATGAAACATCCTTTGGGGAATCAAGCACCAAGTTTGATGAATGTTGTTGTTACGAGTGCGATGGCCATGAATGCTGCAGCAAAGCAAGATCAAACCAAAACCAATGATGTGAGTCAAGCTATTCAGGCGAATCAATCTACAACCAGCAACCAGATCAATGGGAATCACAATATAAATCAATCTCATCATCGTCGGAATAATTCACAATCTGGGGTTAGTAATACTAAAGGAAGGGAACTTGAAGACCCTGCCGACAAGGCTCAGATAAAGGCATTGTCAGCTAGAGCTCTCTGGTATCTAGCTAAGGGTAACTCGGCTATATGTCGTAATATCACAGAATCAAAGGCCCTGCTGTGCTTTGCAGTGTTGTTAGAGAAAGGGCGTGAAGATGTTCAGTACAATTCTGCAATGGCACTAATGGAAATAACAGCAGTGGCAGAGCAAGATGCTGACTTGAGAAGATCTGCATTCAAGCCAAACTCTCCGGCTTGCAAAGCAGTAATTGATCAATTACTGAAGATCATTGAGACTGATTCTATCCTTCTTGTTCCTTGCGTCCAGGCCATTGGGAATTTGGCCAGGACATTTCGAGCGACAGAGACTAGGATGATTGGTCCATTAGTAAAGCTGCTCGATGAAAGAGAGCCTGAGGTGACGAGAGAGGCATTGATAGCTCTCACGAAATTTGCGGGCTCTGAAAATTACCTCCGCCTAGATCACTCCAAGGCAATCATAAGTGCAGGTGGGGCGAGACACTTAGTTCAGCTTGTGTATTTCGGAGAGCAGATTGTTCAAGTTTCAGCTATTATTCTCCTAAGCTACATTGCATTGAATGTGCCAGACAGCGAGGAACTTGCCCAGGCTGAAGTGCTCACTGTGCTTGAATGGGCATCTAAACAATCTTTTGTGTCACATGATGAAAAACTGGACACACTATTGCAAGAAAGCAAGAGTAAGTTAGAGCTATATCAATCTAGAGGTTCAAGATGA 1983 0.4493 MADIVKQILAKPIHLADQVIKAADEANSSFKQECAEIKSKTEKLAGLLRQAARASSELYERPARRIIDDTGQALDKAMSLMLKCRGSSLMKRVFTIIPAAVFRKMSSQLENSIGDVSWLLRVSAPADGRDDEYLGLPPIAANEPILCLIWEQIAILYTGSVEDRSDAAASLVSLARDNDRYGKLIIEEGGVGPLLKLMKEGKMEGQENAARAIGLLGRDPESVEYMIHAGVCSVFAKMLKEGPMKVQAVVAWAVSELVANNPKCQDLFAQHNIVRLLVGHLAFETVQEHDKYSIASIKATSLHALVMASNNLNVQTTKNASEDEDKQYQSQMKHPLGNQAPSLMNVVVTSAMAMNAAAKQDQTKTNDVSQAIQANQSTTSNQINGNHNINQSHHRRNNSQSGVSNTKGRELEDPADKAQIKALSARALWYLAKGNSAICRNITESKALLCFAVLLEKGREDVQYNSAMALMEITAVAEQDADLRRSAFKPNSPACKAVIDQLLKIIETDSILLVPCVQAIGNLARTFRATETRMIGPLVKLLDEREPEVTREALIALTKFAGSENYLRLDHSKAIISAGGARHLVQLVYFGEQIVQVSAIILLSYIALNVPDSEELAQAEVLTVLEWASKQSFVSHDEKLDTLLQESKSKLELYQSRGSR* 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00546 660 SUPERFAMILY ARM repeat 154 635 IPR016024 -
Pte12g00546 660 Pfam Armadillo/beta-catenin-like repeat 184 215 IPR000225 GO:0005515
Pte12g00546 660 MobiDBLite consensus disorder prediction 375 407 - -
Pte12g00546 660 Coils Coil 37 57 - -
Pte12g00546 660 PANTHER ARMADILLO REPEAT ONLY 4 1 659 - -
Pte12g00546 660 FunFam Armadillo repeat only 2 151 320 - -
Pte12g00546 660 FunFam Armadillo repeat only 4 2 122 - -
Pte12g00546 660 Gene3D - 2 122 IPR036537 GO:0007166
Pte12g00546 660 Gene3D - 151 376 IPR011989 -
Pte12g00546 660 SMART arm_5 491 525 IPR000225 GO:0005515
Pte12g00546 660 SMART arm_5 219 259 IPR000225 GO:0005515
Pte12g00546 660 SMART arm_5 568 608 IPR000225 GO:0005515
Pte12g00546 660 SMART arm_5 177 218 IPR000225 GO:0005515
Pte12g00546 660 SMART arm_5 435 475 IPR000225 GO:0005515
Pte12g00546 660 Gene3D - 395 644 IPR011989 -
Pte12g00546 660 MobiDBLite consensus disorder prediction 375 414 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00546 Pte-Chr12 4854307 4857591 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00546 153 297 U-box Gene Family AT1G23030 27.397 8.07e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00546 - - qsa:O6P43_024874 990.334