Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00529 ATGGAATTTTGGGCACACCCAGCTGCTCTGTTTTCATATTCATCTTCTGTCCTTGAGAACTTCGTTGCAAGAGTAAAACAAGCCTGTAATTTTGCTGTTTCAGCAATCATTGGAAACGTCTTCTCTGCGATCTTGACATTCTGTTTTGCATTAGTGGGAACTCTCCTAGGAGCTATGACTGGAGCTTTAATTGGCCAAGAAACTGAGAGTGGTTTCATTAGAGGTGCTGCTGTGGGTGCCATATCAGGAGCTGTTTTTTCAATTGAAGTATTTGAATCATCTCTTGTTCTCTGGCAGTCTGATGAATCCGGTATCGGGTGCCTCCTCTACTTGATTGACGTTCTTGCAAGCCTTCTAAGTGGGAGATTAGTTCGTGAGAGGATAGGTCCAGCTATGTTAAGTGCCGTGCAGAGTCAGATGGTTGCTGTTGAAACAAGTTTTGATGAGGTACATAACATCTTCGACATTGGTGGGGTTAAAGGGTTACCTGGAGATATAGTTGAAAAAATCCCAAAGATCAGAATTTCAAGTGAAAACCATGTTGATACTTCTGGAGAAAAAGCTTCTTGCTCAGTTTGCCTCCAGGATTTTCAACTCGGGGAGATGGTTAGAAGTTTGCCTCATTGCTGTCACATGTTTCACCTGCCTTGCATAGATAAGTGGCTATCCAAGCATGCTTCTTGTCCATTGTGCAGAAGGGATCTGTAA 708 0.4294 MEFWAHPAALFSYSSSVLENFVARVKQACNFAVSAIIGNVFSAILTFCFALVGTLLGAMTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVLASLLSGRLVRERIGPAMLSAVQSQMVAVETSFDEVHNIFDIGGVKGLPGDIVEKIPKIRISSENHVDTSGEKASCSVCLQDFQLGEMVRSLPHCCHMFHLPCIDKWLSKHASCPLCRRDL* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00529 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 235 IPR013083 -
Pte12g00529 235 SMART ring_2 190 231 IPR001841 -
Pte12g00529 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Pte12g00529 235 SUPERFAMILY RING/U-box 170 235 - -
Pte12g00529 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Pte12g00529 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 22 234 IPR044523 -
Pte12g00529 235 Pfam Ring finger domain 189 232 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00529 Pte-Chr12 4687749 4689828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00529 24 236 C3H Transcription Factor Family AT5G66070 77.465 2.66e-116 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00529 - - qsa:O6P43_033568 403.675