Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00508 ATGTACACTGGTCAGTTTGTCTACTGCGGCAAGAAGGCTACCCTTGTGGTGGGTAATGTCTTGCCGGTTAGATCTATTCCCGAAGGTGCTGTTGTTTGCAACGTTGAGCACCATGTCGGTGACCGTGGTGTCTTTGCTCGGGCATCTGGTGATTATGCTATTGTTATCAGTCACAATCCAGATAACGACACAACCAGGGTTAAGCTTCCATCTGGTGCCAAGAAGATTATTCCGAGTGGCTGCAGGGCTATGATTGGGCAGGTTGCAGGTGGAGGGAGAACTGAGAAGCCTCTACTGAAAGCTGGTAATGCATACCACAAGTTTAGGGTTAAGAGGAACTGTTGGCCTAAGGTGCGTGGTGTGGCTATGAACCCAGTAGAGCATCCTCATGGAGGAGGTAACCACCAGCATATTGGTCATGCAAGTACTGTCCGGCGTGATGCTCCCCCTGGACAGAAGGTTGGTCTTATTGCTGCACGTAGAACTGGTCGTCTTAGAGGACAGGCTGCTGCTACTGCTGCTAAAGCTGACAAGGGTGCTTGA 543 0.5064 MYTGQFVYCGKKATLVVGNVLPVRSIPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNPDNDTTRVKLPSGAKKIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATAAKADKGA* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00508 180 Gene3D Ribosomal protein L2, domain 3 89 167 IPR014726 -
Pte12g00508 180 Gene3D - 9 88 IPR014722 -
Pte12g00508 180 Pfam Ribosomal Proteins L2, C-terminal domain 17 144 IPR022669 GO:0003735|GO:0005840|GO:0006412
Pte12g00508 180 ProSitePatterns Ribosomal protein L2 signature. 116 127 IPR022671 GO:0003735|GO:0005840|GO:0006412
Pte12g00508 180 SMART Ribosomal_L2_C_2 15 150 IPR022669 GO:0003735|GO:0005840|GO:0006412
Pte12g00508 180 FunFam 60S ribosomal protein L8 9 88 - -
Pte12g00508 180 PANTHER RIBOSOMAL PROTEIN L2 1 173 IPR002171 GO:0003735|GO:0005840|GO:0006412
Pte12g00508 180 MobiDBLite consensus disorder prediction 129 149 - -
Pte12g00508 180 SUPERFAMILY Translation proteins SH3-like domain 18 165 IPR008991 -
Pte12g00508 180 FunFam 60S ribosomal protein L2 89 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00508 Pte-Chr12 4545754 4547058 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00508 1 177 Cytoplasmic Ribosomal Protein Gene Family AT4G36130 92.655 6.24e-124 348
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00508 K02938 - egr:104419669 328.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00508 12 4545754 4547058 Pte12g00508 12 4545754 4547058 RCT