Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00493 ATGGAATGCGTAGAAGCGGCCTTGAAAACCAGTTTCAGAAAGGAGATGGCAATGAAAACAAGCCCACAAGCATTTCTTGAGGATTTGTGTGTTTTGAATGTCCAAAATGGTGCCCCATGTGAAGACTTCTTTGTGGATGACCTCTTCGACTTCTCAAACCAAGATGACCTAGTTGAGGAGCAGGTACAAGAAGAGGAAGGAGAAGACAAGGTTATCTCTTGCTCTGTCTCTGTTTCACCACAAGCGGACAGTCTAAGACATGGAATTTCTCTACCATGTTCAACTCTCTCTGCCAAAGATGATTTCGGGTCTCTACCCACAGGCGAACTCAGCGTTCCGGCGGATGAATTGGCGGACTTAGAATGGCTGTCACACTTTGTGGAGGATTCCTTCTCGGAACACTCTGCTGCGTACGTTGCCGGAAATTTAACAGAGAAACCGAAGCACCATGCAATTGCAGAGGAAAAAGGACCTGAACCCGAAAATGTAAATGTTTCGCCTCAGAATTGTTTCAAAAGTACCGTTCCGGCAAAAGCCCGAAGCAAACGAGCTAGAACCGGTGTTCGAGTTTGGTTGCTGGGGTCTCCTTCCCTCACTGAGTCATCCTCAAGTTCGGCCTCCTCTTCGTCGTCTTCTTCTCCTCCTAGTCCTTGGCTTGTATATCCAAGTACAACCATCCAGAACCACGAACCAGTTTCCTCCTCCGATGTTGTCAAGCCGCCAGCAAAGAATCCAAAGAAGAAAACAGTTCCTGACTGGGCAGGTACCCGTCACAGTGGCGGCTCCAGCCAAGCACCACGGCGGTGCAGTCATTGTGGCGTCCAGAAGACCCCACAGTGGAGAGCCGGTCCACTTGGAGCCAAAACCCTCTGTAACGCCTGCGGCGTAAGATTTAAGTCGGGTCGGCTCTTTCCCGAATACAGACCGGCTTGTAGTCCAACATTTTCGAGCGAATTACACTCTAACCACCACCGCAAAGTCCTAGAAATGCGGCGGAAGAAGGATGTTTCGTCCGGACCCGAGTCGGGTTTTACCACTCCGGTCGTCACCAGTTAG 1056 0.5019 MECVEAALKTSFRKEMAMKTSPQAFLEDLCVLNVQNGAPCEDFFVDDLFDFSNQDDLVEEQVQEEEGEDKVISCSVSVSPQADSLRHGISLPCSTLSAKDDFGSLPTGELSVPADELADLEWLSHFVEDSFSEHSAAYVAGNLTEKPKHHAIAEEKGPEPENVNVSPQNCFKSTVPAKARSKRARTGVRVWLLGSPSLTESSSSSASSSSSSSPPSPWLVYPSTTIQNHEPVSSSDVVKPPAKNPKKKTVPDWAGTRHSGGSSQAPRRCSHCGVQKTPQWRAGPLGAKTLCNACGVRFKSGRLFPEYRPACSPTFSSELHSNHHRKVLEMRRKKDVSSGPESGFTTPVVTS* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00493 351 Pfam GATA zinc finger 269 302 IPR000679 GO:0006355|GO:0043565
Pte12g00493 351 PIRSF Txn_fac_GATA_plant 1 346 IPR016679 GO:0003677|GO:0005634|GO:0045893
Pte12g00493 351 MobiDBLite consensus disorder prediction 197 270 - -
Pte12g00493 351 ProSitePatterns GATA-type zinc finger domain. 269 294 IPR000679 GO:0006355|GO:0043565
Pte12g00493 351 ProSiteProfiles GATA-type zinc finger domain profile. 263 299 IPR000679 GO:0006355|GO:0043565
Pte12g00493 351 SMART GATA_3 263 317 IPR000679 GO:0006355|GO:0043565
Pte12g00493 351 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 264 325 - -
Pte12g00493 351 Gene3D - 260 337 IPR013088 GO:0006355|GO:0008270
Pte12g00493 351 MobiDBLite consensus disorder prediction 331 351 - -
Pte12g00493 351 MobiDBLite consensus disorder prediction 256 270 - -
Pte12g00493 351 PANTHER GATA TRANSCRIPTION FACTOR 32 342 - -
Pte12g00493 351 FunFam GATA transcription factor 259 342 - -
Pte12g00493 351 MobiDBLite consensus disorder prediction 197 234 - -
Pte12g00493 351 CDD ZnF_GATA 268 316 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00493 Pte-Chr12 4449877 4451714 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00493 5 348 C2C2-Gata Transcription Factor Family AT5G66320 53.198 3.14e-92 277
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte12g00493 GATA 1.9e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00493 - - qsa:O6P43_033646 404.831