Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00491 ATGGGGCGTGGGAAAATTGAGATCAAGAAGATTGAGAACCCCACAAACAGGCAGGTCACTTACTCCAAACGCAGGAATGGTATCTTCAAAAAAGCTCAGGAACTCACTGTTCTCTGTGATGCTAAGGTCTCCCTTATCATGTTCTCTACTACTGGAAAGATGCACGAATACACCAGCCCGACCACAACAACGAAGAAGATCTATGATCAGTATCAGAAAACTTTGGGAACCGATCTCTGGCAAGGCCACTATGAGAGAATGCAGGACAATCTGCTGAAACTCAGAGAGATCAACAGCAAACTGAGAAGAGATATTAGGCAAAGGACGATGGGTGAGGATCTGGATGATATGAGCTTTCATCAACTGCGTAGTCTCGAGGACAATATGGATGCTTCCCTAACTCTCATACGTGAAAGAAAGTTCCACGTGATCAAAACTCAGACTGACACTTGTAAGAAAAGGGTCAAGAATCTAGAGGAAATACATGGAAACATGATGCTTGAATTTGAAGCCAAGTGTCAGATCGATCCACAGTACGGTTTGGTGGGATCTATTGAAGGAGATTATGAATCAGCATTGGCACTGGCTAATGGAGCTTCCAACCTCTATGCTTTCCGCCTGCACCATAGCCATTTGGACCTTCACCACAGTGCTCCAGATCATCACAAAACTCATGATCTACGTCTAGGTTGA 693 0.4444 MGRGKIEIKKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSTTGKMHEYTSPTTTTKKIYDQYQKTLGTDLWQGHYERMQDNLLKLREINSKLRRDIRQRTMGEDLDDMSFHQLRSLEDNMDASLTLIRERKFHVIKTQTDTCKKRVKNLEEIHGNMMLEFEAKCQIDPQYGLVGSIEGDYESALALANGASNLYAFRLHHSHLDLHHSAPDHHKTHDLRLG* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00491 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Pte12g00491 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Pte12g00491 230 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Pte12g00491 230 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 165 - -
Pte12g00491 230 Coils Coil 84 104 - -
Pte12g00491 230 Gene3D - 13 82 IPR036879 GO:0003677|GO:0046983
Pte12g00491 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Pte12g00491 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Pte12g00491 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Pte12g00491 230 ProSiteProfiles K-box domain profile. 84 175 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte12g00491 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Pte12g00491 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Pte12g00491 230 Pfam K-box region 82 166 IPR002487 GO:0003700|GO:0005634|GO:0006355
Pte12g00491 230 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00491 Pte-Chr12 4426882 4429004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00491 1 221 MADS-box Gene Family AT3G54340 52.941 1.92e-75 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Pte12g00491 K-box 6.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00491 K09264 - vvi:100233014 331.257