Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00485 ATGGCGGATGCCAATGAGACAGGGAAACCTGACGAGAATCAACCAGCAGAGCAAGTGTGCAGCTTCTTTAGGAAGCCAGCTAATAGGAAGAATATAAGGAAGAGAACAGTTGGTGACGAAGATGAGGGGGAGGATTCAAAGAATGAAAGTCCTTTGTCACAAGTTCAGAAAAAGAACCAAAAGACCGAAAACAAATTGTACTTCTCAACTGGTCCTTCAAAGAGTTCTAGCTCTTCTGGACAAGAAAAAGGACCTCAGAAACCGATATTTACCTTTGAATCTTCAAAGCAGATACAGGTTGAGCATGACAGCAAAGCAACTGCAACTCTTGAAACAGAGACAGAATTTGATAGGGATGCTAGAGCCATCCGTGAAAGAGCACTCAAACAAGCAGATGAGAGTTTGAAGGGAAAAGGATCCGGTTTAGGGAATGAAAAGCTGTATAAAGGTATGAATAGTTACACTGATCACAAGGCCGGTTTTCGTAGGGAGCAAACCATTTCTAGTGAGAAAGCTGGTGGGTCACATGGACCTCTAAGAGCTTCAGCTCATATTAGAGTTTCAGCAAGATTTGATTATCAACCTGACATTTGCAAGGATTACAAAGAGACTGGTTATTGTGGATATGGTGACTCTTGTAAGTTCATGCATGATCGAGGGGATTACAAGTCTGGGTGGCAGTTGGAAAAGGAATGGGATGAAGCAGATAAAGAAAGGAAGAGAAGACTAGCGTCTGGACAGGATAACATAGATGATGAAGGTGGGCAAGATTACAATGATGATGAAGATGATGATTCATTGCCATTTGCCTGTTTCATTTGTAGGAACCCATTTGTGGATCCTGTAATGACCAAGTGCAAGCATTATTTTTGTGAGCATTGTGCACTGAAGCATCATGCAAAGAACAAGAAATGTTTTGTCTGCAACACCCCTACACTTGGGATTTTCAACACAGCACACGAGATCCGCAAGAAGATGGCTGCAGAGGGAAAATGA 996 0.4227 MADANETGKPDENQPAEQVCSFFRKPANRKNIRKRTVGDEDEGEDSKNESPLSQVQKKNQKTENKLYFSTGPSKSSSSSGQEKGPQKPIFTFESSKQIQVEHDSKATATLETETEFDRDARAIRERALKQADESLKGKGSGLGNEKLYKGMNSYTDHKAGFRREQTISSEKAGGSHGPLRASAHIRVSARFDYQPDICKDYKETGYCGYGDSCKFMHDRGDYKSGWQLEKEWDEADKERKRRLASGQDNIDDEGGQDYNDDEDDDSLPFACFICRNPFVDPVMTKCKHYFCEHCALKHHAKNKKCFVCNTPTLGIFNTAHEIRKKMAAEGK* 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00485 331 FunFam RING finger protein 113A 269 328 - -
Pte12g00485 331 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 193 218 IPR000571 GO:0046872
Pte12g00485 331 CDD RING-HC_RNF113A_B 267 317 - -
Pte12g00485 331 Pfam Zinc finger, C3HC4 type (RING finger) 270 312 - -
Pte12g00485 331 SUPERFAMILY CCCH zinc finger 191 223 IPR036855 GO:0046872
Pte12g00485 331 SMART c3hfinal6 192 219 IPR000571 GO:0046872
Pte12g00485 331 FunFam Zinc finger CCCH domain-containing protein 1 190 224 - -
Pte12g00485 331 ProSitePatterns Zinc finger RING-type signature. 286 295 IPR017907 -
Pte12g00485 331 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 328 IPR013083 -
Pte12g00485 331 MobiDBLite consensus disorder prediction 1 110 - -
Pte12g00485 331 PANTHER ZINC FINGER PROTEIN 183 13 329 IPR039971 -
Pte12g00485 331 MobiDBLite consensus disorder prediction 239 259 - -
Pte12g00485 331 ProSiteProfiles Zinc finger RING-type profile. 271 309 IPR001841 -
Pte12g00485 331 ProSiteProfiles Zinc finger C3H1-type profile. 192 220 IPR000571 GO:0046872
Pte12g00485 331 MobiDBLite consensus disorder prediction 49 105 - -
Pte12g00485 331 SMART ring_2 271 308 IPR001841 -
Pte12g00485 331 SUPERFAMILY RING/U-box 270 314 - -
Pte12g00485 331 Gene3D - 190 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00485 Pte-Chr12 4390856 4392304 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00485 16 329 C2H2 Transcription Factor Family AT1G01350 70.701 3.58e-161 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Pte12g00485 zf-C3HC4_3 1.6e-08 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00485 K13127 - gmx:100787434 514.998