Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00482 ATGGCTGGCTTTTTCTCATTGAGTGGAGGAGGCAACAAAGGTAATAATTGTAATAACCAAGAGGAACAACACCGAATCACAACAGAGATTTCTCAACCAGACTGTTTATTTTGGCACAGAAACGAAGATGATGTACCGTACAACAGGGGTTTCGAGCTATGGCAGCAGCAGCAGCTTCTTCAACAGAGACAGTTTCTCCACCAACAAGACCTTTACTCGTCAGCTGCAGCCTTAGGAGTGGGACCTAGTGAAAGCTCAATTAACGCCCCCGTCTCCGAACATCATTTATCGTCGAGATCAGCCTACATGATGATGAGGTCTTCAAGTAGTTCTGGAGGAATAAGCTGTCAGGACTGTGGGAACCAAGCCAAGAAAGATTGCGTTCACATGCGGTGTAGGACTTGCTGTAAGAGCCGAGGCTTCGACTGCCAGACTCATGTCAAAAGTACTTGGGTTCCGATCGCCAAACGCCGTGAGCGGCAGCAGCAGCTTCAACATCGTGGAGAGAACTCTAAACAAAAGGGAGAGAATGATAGCAAAGACAATGCAAGCTCTTCATCTCTTGCCTGCGCCCACTTGCCTCACAACCCTTCAGGGTTAGTAGAGCTTGGAAATTTTCCAGCAGAGGTGAATTCTTCAGCTGTATTCCGATGTGTAAGAGTGACATCAATTGATGACGTTGACGACCAATATGCTTATCAAACGACCGTAAACATTGGAGGCCATCTTTTTAGGGGAATTCTCTACGATCAAGGTCCTGAAAGCGAGTCCATGGCTCCACAAGAAAGCTACTCCGGTACTTTAGGTGGTGCTATTGGCGGACGAGTCCAACCCTTGAACCTCACAGCTACTGCTGCTGACCCCAACAGCACCTCTACCTTGGGCACCACTGCAAGTGGTGACTATGGAGGAGCCGTAGTGGTTTCCTCTTCTGGGGTTATGGTGGATCCTTCTTCTCTTTATCCAGCTCCGTTTAGCTCCTTCATTGCTGGTACGCAAATCTTCCAACAACCAAGATCGCGAATGATCTAA 1032 0.4797 MAGFFSLSGGGNKGNNCNNQEEQHRITTEISQPDCLFWHRNEDDVPYNRGFELWQQQQLLQQRQFLHQQDLYSSAAALGVGPSESSINAPVSEHHLSSRSAYMMMRSSSSSGGISCQDCGNQAKKDCVHMRCRTCCKSRGFDCQTHVKSTWVPIAKRRERQQQLQHRGENSKQKGENDSKDNASSSSLACAHLPHNPSGLVELGNFPAEVNSSAVFRCVRVTSIDDVDDQYAYQTTVNIGGHLFRGILYDQGPESESMAPQESYSGTLGGAIGGRVQPLNLTATAADPNSTSTLGTTASGDYGGAVVVSSSGVMVDPSSLYPAPFSSFIAGTQIFQQPRSRMI* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00482 343 NCBIfam putative zinc finger domain, LRP1 type 115 157 IPR006510 -
Pte12g00482 343 MobiDBLite consensus disorder prediction 154 189 - -
Pte12g00482 343 Pfam Domain of unknown function (DUF702) 113 254 - -
Pte12g00482 343 MobiDBLite consensus disorder prediction 154 179 - -
Pte12g00482 343 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 1 326 IPR007818 GO:0003700|GO:0006355
Pte12g00482 343 NCBIfam LRP1 C-terminal domain 206 253 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00482 Pte-Chr12 4341643 4343741 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00482 1 335 C2H2 Transcription Factor Family AT5G66350 46.779 2.27e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Pte12g00482 DUF702 2.2e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00482 - - qsa:O6P43_033661 342.428