Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00435 ATGTCGTTGAAAAGTTTAGTCCGTGAACTGAAGGAGATGAAAGGTGGAATGGGCAGCTTATCAAAGCGAGGTGCAGAAAGCAAGAAATGGCACTGCAGGTCAAAATCTCATATTGCTCCTGATTTTCCTCTAACCCCGTTTGAACCCATTCAACAGGGCCAATGGGCAAATTTACCTCCTGAGTTGTTGTTGGACATCATTCGGAGAGTAGAGGAGAGTGAGACATCTTGGCCTGCACGGGCTGTCATCGTCTTTTGTGCTTCTGTGTGTAAATCATGGAGGGCAGTTACAAAAGAGATCGTCAAGACACCTGAGCAATGTGGACGGCTCACATTTCCTGTCTCGTTGAAACAGCCGGGACCTAGAGATGTTCCAATTCAGTGTTTTATAAGGAGGAACAGGGAAACTTCTACATTTTTGTTGTACCTGGGTCTCGTGCCTTCGGAGAACGAGAGTGACAAGTTGTTGTTAGCAGCAAGGAAGGTAAGAAGAGCAACAGGCATAGACTTTATTATATCTTTGGTTACTGATGATTTTTTTCGGGCAAGCAACACATATATTGGAAAATTAAGGTCAAACTTTTTGGGCACCAAATTCACCATATATGATAGCCAACCCCCACACGAAGTCAGGTCTCAAAGAAATGGTCGGTCAAGTAGGAGGTTTCATTCTAAACAGGTCTCACCAAGAGTTCCAGCATGCAATTACAATGTTGGCACCATTGCCTATGAGCTCAATGTTCTCCGTACTAGAGGACCGAGAAGAATGCACTGCGTCATGAATTCCATACCCATCTCTTCTCTTGAGGAAGGAGGCACTGCCCCAACAACGACATCATTTCCATTTAATTTTGAGGAGCAGGCATCTCCCTTAGCTGCTTTGAAAGGGAAAGACCCAATTATAGATTTTAGCTCCACAAGCCTTTCAGAACGTCCAGCAGCACAGGTGTGGGAAGAGCCACTTGTTCTCAAGAACAAATCTCCAAGATGGCATGAGCAGCTACAGTGTTGGTGCCTAAACTTCAAGGGTCGTGTTACTGTGGCATCTGTTAAGAATTTCCAACTTGTTGCAGCTGTTGATCCATCCCATAACATTTCTGCTGAAGAACAGGAAAAGGTGATCTTGCAGTTCGGCAAGATTGGAAAAGATATATTTACCATGGATTATCGCTATCCTCTCTCTGCCTTCGAAGCATTTGGTATCTGCTTGAGCAGCTTTGATACCAAGCCCGCCTGTGAATAA 1242 0.4461 MSLKSLVRELKEMKGGMGSLSKRGAESKKWHCRSKSHIAPDFPLTPFEPIQQGQWANLPPELLLDIIRRVEESETSWPARAVIVFCASVCKSWRAVTKEIVKTPEQCGRLTFPVSLKQPGPRDVPIQCFIRRNRETSTFLLYLGLVPSENESDKLLLAARKVRRATGIDFIISLVTDDFFRASNTYIGKLRSNFLGTKFTIYDSQPPHEVRSQRNGRSSRRFHSKQVSPRVPACNYNVGTIAYELNVLRTRGPRRMHCVMNSIPISSLEEGGTAPTTTSFPFNFEEQASPLAALKGKDPIIDFSSTSLSERPAAQVWEEPLVLKNKSPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAVDPSHNISAEEQEKVILQFGKIGKDIFTMDYRYPLSAFEAFGICLSSFDTKPACE* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00435 413 Pfam Tub family 116 408 IPR000007 -
Pte12g00435 413 SUPERFAMILY F-box domain 49 99 IPR036047 GO:0005515
Pte12g00435 413 Pfam F-box domain 55 102 IPR001810 GO:0005515
Pte12g00435 413 SUPERFAMILY Tubby C-terminal domain-like 104 413 IPR025659 -
Pte12g00435 413 PRINTS Tubby superfamily signature 370 389 IPR000007 -
Pte12g00435 413 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Pte12g00435 413 PRINTS Tubby superfamily signature 391 413 IPR000007 -
Pte12g00435 413 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Pte12g00435 413 PRINTS Tubby superfamily signature 341 357 IPR000007 -
Pte12g00435 413 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Pte12g00435 413 PRINTS Tubby superfamily signature 323 340 IPR000007 -
Pte12g00435 413 PANTHER TUBBY-RELATED 48 411 - -
Pte12g00435 413 FunFam Tubby-like F-box protein 112 413 - -
Pte12g00435 413 CDD F-box_AtTLP-like 55 99 - -
Pte12g00435 413 ProSitePatterns Tub family signature 1. 341 354 IPR018066 -
Pte12g00435 413 Gene3D - 48 103 - -
Pte12g00435 413 ProSitePatterns Tub family signature 2. 398 413 IPR018066 -
Pte12g00435 413 Gene3D Tubby Protein; Chain A 112 413 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00435 Pte-Chr12 3711951 3714976 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00435 1 413 TUB Transcription Factor Family AT2G18280 62.651 0.0 515
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Pte12g00435 Tub 1.8e-106 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00435 K19600 - gmx:100798958 682.945