Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00433 ATGGGTTCTGATGCCACAGAGGAAGCAAAGCCAATGCCAAACCCCAGCTCCTTTAAGGTGCATCGCGAAATCTGCACTGAACTAATGAAATTTGTGATGAGTGTCTCACGGATTGTTCCAAACATAGAAGAAGCCAGGCCCCGATGCACCTCATGCATACAGGCATTGTGCTTATTAAGCAATGCAATGGATAAAGCTAAACTGCTTCTGCAACACTGCAGTGAATCTAGCAAACTTTACCTGGCACTAACAGGGGAGAAAATAGTCTTGAGATGTGAAAATTTAATCAAGTCGATGGAACAAAGCTTAGATGAACTTCAAAAAAATGTTCCTGTAATGTTAGCAGCAGAGTTATCCCGAATGATTGATGATCTGAGAAGTGCAAGCTTCATCTTAGACACTACAGAACATGAAGCTGGGAGGATTGTCAGAAAACTGCTTCAGCAAGGTCCTCCTGATTCAGACTCCATGAAGAAATCTCAAATTGGAGATCTTCAATCTGTGGCATTAAAACTCCAGGTTATATCCTCCAAGGATCTGTTGACAGAAAAAAGATCCATCAGAAAGTTGCTTGAAATAAGTAAAACTGATACAAGAAAGACGAATATCTTAATGCACCTTCTTTCTTTATTGAATAAGTATGGGAATGTTATAGTGAAGGTCCTGAAAGAACAATTTGAGAAAGCTGATGAATCTAATGAAGTACTAGTAGCCGTGGAAAACCCCTGTCATGATTCCCTCGGCAGAATGTCTGGTCAACAGGAAACACACAGTGCACACCCGCAGTTGGATGCTCATGCCATTGAGTTGCGTAGTAGAATTGTTCCACCTGAGGAATTTAAGTGTCCTATATCCTTAAAACTGATGTATGACCCTGTTGTGATTGCTTCTGGACAAACATATGATAGGATGTGGATACAGAAATGGTTTGATGAAGGCAATGACTGGTGTCCTAAAACTGAGACTAAACTGGCCCGACTATCATTGACTCCAAATGTAATCATGAAGGACTTGATATCAAAGTGGTGTACAGACCATGGAGTCACTCTTTGTGACCCCAGTGTGCAGCGAGAAGCTTTACACTTATGGGAATCATCCTCTGCATCCATTACAAGCCTTGGCAGTTCTATGAATGACTTGCACTTCCATATGGATCTTAGTAATGTTTCACTTGGGTCTATAGATACTAGTCGCTGTTCAGATTCCTTACCTAGTAGTACGGTTGAAGGAGAAAACTTCAAGCTGATGAATTGTGGTGGTCGATCTCATGAAAACATATCGGGGATTGATTCAGTCCTTCTGTCTAAAATTTCTGAACTTGAGTGGTTTTCAAAATGTCAGCTTATTGAAGATGTCAAAAACCATTTCAAAAGTAATTATCGTGCTTGTCAATATGTGTCCTCTGAAAATTTTGTTGAACCGTTGATGAAATTTATCAGGGATGCTTATGATCTTTGCGACATTGAAGCTCAGAAAGCTGGAAATCAGTTGCTTTTGGAATTTGTGACCAACTGCAGAAATGATTTACTGTATTTGACTGAAGATGTATACAGTATAGTGGCAAGGGTTCTTGATGCGGAAGTAACAGAAGAAGCTCTTGCTATGGTAGAAGCCTTGGTTGGCTATCAGCATTGCAGAGAGAAAGTGGCTACAACTGATAATCTGACTTCCATTGTAAAGGTCCTAGACTCGGGTAGCAGAGAATTGCAGCAGAGAGCTATTCGTATTTTGTGTAACTTGTCATCAAACAGTGAAGTTTGTTCTCAATTGGTATCTCTTGGTTGTGTCTCAAAGTTAGTACAGTTCTTGAATGATGGAAAGCTGGTGGGACAATGTATGTGTATAATACAGAATCTTTGCAATGTAGAAGAAGGCCGGGTTTCTGTGATTGAAACTGATGGATGCATATTTTTCGTTGCTAAACTGCTTGAGAGTGACAGTTGTGAGGACCAGGAACATGCACTCGCCGTTTTAGTCTCTTTATGCTCTCAACGTGTTGAATACTGTGAGTTGGTGGCGGAGTCTGTCATCCCTTCCCTTGTGAGTATATACGTTAATGGAAATGACAAAGGAAAGGCTATGGCATCAGAATTGCTTCGCCAATTGAGAGATATCCAATGTGACAATAGTGATGAAGAACACGACACACTAGAACCTGATGCAACTCGTGATTCAATCAAGCATCCGGTTGAAAAGAAATCTTCAAATGTCTCTAGAATATTACGGATGAAACTATCAGTATACTCTAAACTTGGTTCGTTGGCCTATAGGAGAAAGAGATGA 2283 0.4047 MGSDATEEAKPMPNPSSFKVHREICTELMKFVMSVSRIVPNIEEARPRCTSCIQALCLLSNAMDKAKLLLQHCSESSKLYLALTGEKIVLRCENLIKSMEQSLDELQKNVPVMLAAELSRMIDDLRSASFILDTTEHEAGRIVRKLLQQGPPDSDSMKKSQIGDLQSVALKLQVISSKDLLTEKRSIRKLLEISKTDTRKTNILMHLLSLLNKYGNVIVKVLKEQFEKADESNEVLVAVENPCHDSLGRMSGQQETHSAHPQLDAHAIELRSRIVPPEEFKCPISLKLMYDPVVIASGQTYDRMWIQKWFDEGNDWCPKTETKLARLSLTPNVIMKDLISKWCTDHGVTLCDPSVQREALHLWESSSASITSLGSSMNDLHFHMDLSNVSLGSIDTSRCSDSLPSSTVEGENFKLMNCGGRSHENISGIDSVLLSKISELEWFSKCQLIEDVKNHFKSNYRACQYVSSENFVEPLMKFIRDAYDLCDIEAQKAGNQLLLEFVTNCRNDLLYLTEDVYSIVARVLDAEVTEEALAMVEALVGYQHCREKVATTDNLTSIVKVLDSGSRELQQRAIRILCNLSSNSEVCSQLVSLGCVSKLVQFLNDGKLVGQCMCIIQNLCNVEEGRVSVIETDGCIFFVAKLLESDSCEDQEHALAVLVSLCSQRVEYCELVAESVIPSLVSIYVNGNDKGKAMASELLRQLRDIQCDNSDEEHDTLEPDATRDSIKHPVEKKSSNVSRILRMKLSVYSKLGSLAYRRKR* 761
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00433 760 Coils Coil 89 109 - -
Pte12g00433 760 SMART Ubox_2 279 342 IPR003613 GO:0004842|GO:0016567
Pte12g00433 760 ProSiteProfiles U-box domain profile. 275 349 IPR003613 GO:0004842|GO:0016567
Pte12g00433 760 Pfam U-box domain 277 346 IPR003613 GO:0004842|GO:0016567
Pte12g00433 760 SUPERFAMILY RING/U-box 276 352 - -
Pte12g00433 760 MobiDBLite consensus disorder prediction 710 731 - -
Pte12g00433 760 Gene3D - 448 606 IPR011989 -
Pte12g00433 760 PANTHER U BOX DOMAIN-CONTAINING 25 702 - -
Pte12g00433 760 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 275 350 IPR013083 -
Pte12g00433 760 Pfam Kinesin-associated protein (KAP) 497 649 - -
Pte12g00433 760 Gene3D - 607 718 IPR011989 -
Pte12g00433 760 CDD RING-Ubox_PUB 277 329 IPR045210 -
Pte12g00433 760 SUPERFAMILY ARM repeat 525 708 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00433 Pte-Chr12 3694125 3702556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00433 16 730 U-box Gene Family AT1G24330 30.393 1.06e-94 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00433 - - qsa:O6P43_024773 790.801
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00433 12 3694125 3702556 Pte12g00433 12 3694125 3702556 RCT
Pte14g00903 14 30763966 30767122 Pte12g00433 12 3694125 3702556 RCT