Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00432 ATGGCATCAAACTCAATGACTTCTTCACGTAGCTCAAGCTTCTGGACACCTAAGCAAAACAAAATGTTCGAGAGGGCCCTGGCTGTGTATGACAAGGACACCCCAGACCGCTGGCAGAATGTTGCGAATGCAGTGGGTGGAAAGTCCGCAGAGGAAGTTAAAAGGCACTATAATCTTTTGATAGAAGATGTCAAACACATCGAGTCAGGTAGAGTCCCCTTCCCCAATTATAGAGCAAGCAACAATACCTAA 252 0.4603 MASNSMTSSRSSSFWTPKQNKMFERALAVYDKDTPDRWQNVANAVGGKSAEEVKRHYNLLIEDVKHIESGRVPFPNYRASNNT* 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00432 83 SUPERFAMILY Homeodomain-like 13 69 IPR009057 -
Pte12g00432 83 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 81 IPR044636 GO:0003700
Pte12g00432 83 SMART sant 11 63 IPR001005 -
Pte12g00432 83 FunFam Transcription factor SRM1 7 74 - -
Pte12g00432 83 Gene3D - 6 74 - -
Pte12g00432 83 ProSiteProfiles Myb-like domain profile. 7 61 IPR001005 -
Pte12g00432 83 CDD SANT 15 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00432 Pte-Chr12 3665810 3667254 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte12g00432 Myb_DNA-binding 1.6e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00432 - - egr:104419733 137.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00905 14 30774705 30775782 Pte12g00432 12 3665810 3667254 RCT
Pte12g00432 12 3665810 3667254 Pte12g00432 12 3665810 3667254 RCT
Pte12g00432 12 3665810 3667254 Pte14g00905 14 30774705 30775782 RCT