Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00428 ATGATGCATCGGTGCAGTAGCCCTCATGGGAACATGATCGGGGCCTGTACATGTGGTTCTTTCCACCGCCAAAGCAATTCTTCCTGCATGTTGTTCTCCATGGCCAATCACAAACCCTATGACGAGTCAGATATGCATTATTATCACACGCCTTCTTCAACTTCTGTTGACTGCACGCTTTCCCTTGGAACCCCATCAACTCGATTCACAGAAGAGGAAGAAAGACGTAGCCGCCTTGATCAACGTCGCTCTGGACACTGTGCCTCCAACTTCTGCTGGGATTTACTTCAAACCCAGAACTCTTCTTATACGCAATTCCAAAGTAAGCCTATTCTTGGTACCAACTGTTGTAATTCCAACAATGATCCTCTCGTCGCGCGTCGCTGTGCAAACTGCGACACCACGTCAACTCCCCTTTGGAGGAATGGTCCAAGAGGCCCAAAGTCACTGTGCAATGCGTGTGGAATTAGATTCAAGAAGGAGGAAAGAAGAGCTAGTGCTGCAGGAACTACAATGGTGAATAATGCTGCATCGTCTGCAGGCCATATGGTGGAGTTTAGCAATCAGCACAGCTCTTGGTACACGCATGCTAAGAATCAGAAGATGCAATGTCTTTCTCCGGCAATGGGCAACGAGTTTCATTTTATCGATGACAGTGATCGTGATCCTGACAACGGCGTTTCCTTCGTCTCTTGGCGACTCAACGTCACTGACAGACCAAGCCTCGTCGATGACTTCACCAGATGA 747 0.4833 MMHRCSSPHGNMIGACTCGSFHRQSNSSCMLFSMANHKPYDESDMHYYHTPSSTSVDCTLSLGTPSTRFTEEEERRSRLDQRRSGHCASNFCWDLLQTQNSSYTQFQSKPILGTNCCNSNNDPLVARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAGTTMVNNAASSAGHMVEFSNQHSSWYTHAKNQKMQCLSPAMGNEFHFIDDSDRDPDNGVSFVSWRLNVTDRPSLVDDFTR* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00428 248 Pfam GATA zinc finger 129 163 IPR000679 GO:0006355|GO:0043565
Pte12g00428 248 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Pte12g00428 248 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 126 164 - -
Pte12g00428 248 CDD ZnF_GATA 128 160 IPR000679 GO:0006355|GO:0043565
Pte12g00428 248 SMART GATA_3 123 174 IPR000679 GO:0006355|GO:0043565
Pte12g00428 248 Gene3D - 125 203 IPR013088 GO:0006355|GO:0008270
Pte12g00428 248 ProSitePatterns GATA-type zinc finger domain. 129 154 IPR000679 GO:0006355|GO:0043565
Pte12g00428 248 ProSiteProfiles GATA-type zinc finger domain profile. 123 159 IPR000679 GO:0006355|GO:0043565
Pte12g00428 248 PANTHER GATA TRANSCRIPTION FACTOR 18 10 248 IPR044272 GO:0003700|GO:0009908
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00428 Pte-Chr12 3598092 3599130 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00428 17 249 C2C2-Gata Transcription Factor Family AT3G50870 43.509 3.71e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Pte12g00428 GATA 6e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00428 - - vvi:100247862 322.013
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00428 12 3598092 3599130 Pte12g00428 12 3598092 3599130 RCT