Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00414 ATGTCAGACTACGAAGAGAGATATGAACGCGACGGAGATCAGCCAGACAACTATGCTGGTGGCTTCTCTCCGCAACCTTACAGTGGCGACGGTCGCAGCGGTTCCAAATCTCATCATGGTTCTCCTGACTATGAAAGACACTCTTCCAGGAGTAGGGAAAAGGAACGAGAAAAAGGACGTGATAAGGAGAAGGATACAAGCAAAGATAGAGACAGACACAGAGAGAGAAGTAGGGATAAAGAACGAGTAAGGGACAAGGACAGAGACCATGAAAGGGATCGAGATCGCCACCATAAAGAGAGGCACAGAGATCGCAGTGAAAGAAGGGAACGTGGCAGAGATAGAGATGATGATGATGATGATTACCGCATCCGGGATTATGATAGACGAAGAGACTTTGATAGACCTAGAGAGAAAAAGGACAGACGTAGGTCCCATACACGCTCCCCTCCACCTTCAAGAAGTAGATCACGGAGATCAAGATCAAGGTCAAAAAGCAAAAGGATTAGTGGTTTCGATATGGCCCCTCCTGCTGCTGCAATGCTACCTGGCACGACTACTGCACCAGTTCCAGGAACAAATCCTGCACTGCCTGGATTGTTTCCAAATCTGTTTTCTTTGCCAAGTGGTCAGTTACAGCAGTTCAGCGCCATCTCTGTTATGCCAGTGCAGGCAATGACTCAACAGGCTACTCGGCATGCCAGACGGGTTTATGTTGGAGGCCTTCCGCCTACAGCAAATGAGCAGTCTGTTGCAACGTTTTTCAGTCAGGTTATGTCGACAATTGGAGGAAACACTGCTGGTCCAGGTGATGCCGTTGTTAATGTTTACATCAACCATGAAAAGAAGTTTGCATTTGTTGAGATGAGATCTGTTGAGGAAGCTAGCAATGCAATGGCCCTTGATGGTATTATTTTTGAGGGGGCTCCTGTTAAGGTTAGGAGACCGAGTGACTATAACCCATCTCTAGCTGCAACCCTTGGTCCCAGTCAACCCAATCCAAACCTGAACCTGCGTGCTGTGGGGTTGGCCCCAGGGTCTGCTGGTGGGCTTGAGGGTCCTGATCGGATTTTTGTTGGTGGGCTTCCTTATTACTTTACTGAACAGCAGGTCAGAGAGCTGTTAGAAGCTTTCGGTCCTCTTCGAGGTTTTGATCTGGTGAAAGACAGAGAAACGGGAAACTCCAAGGGATATGCATTTTGTGTATACCAAGATCTAGCAGTGACAGATATTGCATGTGCTGCTCTCAATGGAATAAAAATGGGGGACAAAACCCTCACTGTTAGACGAGCTAATCAAGGCACTATCCAGCTGAAACCAGAACACGAGAACATATTGATGCATGCGCAGCAGCAAATTGCTCTGCAGAAACTGATGCTTCAACCGACTCCGGTACCCACGAAGGTTGTAAGTTTGACTCAAGCCGTTAGTCCAGATGAGCTCAAAGATGATGAAGTTTATGAAGAAATTGTGGACGATATGAGAACCGAGTGTGGAAAATTTGGTACTTTGGTGAATGTGGTTATCCCTCGTCCAAAACTTGACGGAGAGCCATCACCTGGAGTTGGAAAGGTGTTTTTGGAGTATGCTGATACTGATAGCGCCGTAAAGGCTCGTACAGGTCTGAATGGAAGAAAATTTGATGGCAGAGTGGTGGTGGCTGTCTACTATCCAGAGAGTAAATTTGCTGAAGGGGATTATGAAGACTAG 1710 0.4702 MSDYEERYERDGDQPDNYAGGFSPQPYSGDGRSGSKSHHGSPDYERHSSRSREKEREKGRDKEKDTSKDRDRHRERSRDKERVRDKDRDHERDRDRHHKERHRDRSERRERGRDRDDDDDDYRIRDYDRRRDFDRPREKKDRRRSHTRSPPPSRSRSRRSRSRSKSKRISGFDMAPPAAAMLPGTTTAPVPGTNPALPGLFPNLFSLPSGQLQQFSAISVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMSTIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPSDYNPSLAATLGPSQPNPNLNLRAVGLAPGSAGGLEGPDRIFVGGLPYYFTEQQVRELLEAFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGTIQLKPEHENILMHAQQQIALQKLMLQPTPVPTKVVSLTQAVSPDELKDDEVYEEIVDDMRTECGKFGTLVNVVIPRPKLDGEPSPGVGKVFLEYADTDSAVKARTGLNGRKFDGRVVVAVYYPESKFAEGDYED* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00414 569 MobiDBLite consensus disorder prediction 36 140 - -
Pte12g00414 569 SUPERFAMILY RNA-binding domain, RBD 352 437 IPR035979 GO:0003676
Pte12g00414 569 SUPERFAMILY RNA-binding domain, RBD 235 320 IPR035979 GO:0003676
Pte12g00414 569 MobiDBLite consensus disorder prediction 1 187 - -
Pte12g00414 569 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 492 552 IPR000504 GO:0003723
Pte12g00414 569 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 357 426 IPR000504 GO:0003723
Pte12g00414 569 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 469 559 IPR000504 GO:0003723
Pte12g00414 569 SUPERFAMILY RNA-binding domain, RBD 463 561 IPR035979 GO:0003676
Pte12g00414 569 SMART rrm1_1 236 314 IPR000504 GO:0003723
Pte12g00414 569 SMART rrm1_1 473 555 IPR000504 GO:0003723
Pte12g00414 569 SMART rrm1_1 356 429 IPR000504 GO:0003723
Pte12g00414 569 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 235 318 IPR000504 GO:0003723
Pte12g00414 569 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 355 433 IPR000504 GO:0003723
Pte12g00414 569 SMART rrm2_1 236 314 IPR003954 GO:0003676
Pte12g00414 569 SMART rrm2_1 469 555 IPR003954 GO:0003676
Pte12g00414 569 PANTHER RNA-BINDING PROTEIN 34 567 - -
Pte12g00414 569 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 50 567 IPR006529 GO:0003723|GO:0005634|GO:0006397
Pte12g00414 569 CDD RRM2_U2AF65 355 431 - -
Pte12g00414 569 CDD RRM3_U2AF65 467 555 - -
Pte12g00414 569 FunFam U2 snRNP auxiliary factor large subunit 230 331 - -
Pte12g00414 569 MobiDBLite consensus disorder prediction 141 165 - -
Pte12g00414 569 Gene3D - 346 445 IPR012677 -
Pte12g00414 569 FunFam U2 snRNP auxiliary factor large subunit 332 445 - -
Pte12g00414 569 FunFam U2 snRNP auxiliary factor large subunit 463 568 - -
Pte12g00414 569 Gene3D - 230 331 IPR012677 -
Pte12g00414 569 Gene3D - 464 568 IPR012677 -
Pte12g00414 569 CDD RRM1_U2AF65 234 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00414 Pte-Chr12 3421299 3427638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00414 353 548 Eukaryotic Initiation Factors Gene Family AT1G49760 27.411 3.54e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00414 K12837 - jre:108995344 693.345