Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00409 ATGGGAACGGGAGAAGAAATTACTTCTAAACCAGTTACTTCGGTGCAGTACCCATCCTCACCATCCAAATATGAGATGCCAGCTACCCCTTCCTATCATGATTGGGCAAGCACGATGCAGGTCTCAGCTTATAATCACGCCTATTATGGACCTGGAGCGACACCACCACCGTTTTTCCCCCCAGCTGTGGCTTCTCCAACTCCACACCCTTATTTGTGGGGAAGCAAGCACCCTTTGATTTCTCCATATGGGACTCCAGTTCCATATGCTGCTATATATCCTAGTGGTGTCTATGCTCATCCGGATATGCACACGGCTCCAAGTACAGCACATGTCAATCCAGACTTGGAAGGGAAAGTCCCTGGTGCAAAGGACCAAGGTCCAGCAAAGAAAGCCAAGGAAACTCCAGGTACCACAGGTTGGAAGCCAGCAGATACTGGAAATGCAGGCTCTGCATTAGGAAATGATGTCATCTCACAAAGTTCTGGAAATGTTTCTGAAGGTTCATCAGATGCCAGTGGTGAAGATACTTCTAACCAACAGGAACGCACAGGAAACAGAAAGGAAAGATGTGACCAAATGTTTGCTGATGGTGCTAATTCTGAAAATGACACCCCCGGCGCAAATAACCAATATTCAACACCTGGAAAGCCTGTTGCGACTGTGCGTGCAACCAATCTAAATATCGGTATGGAGTTATGGGATGCATCGTCTACTAGTACTGGCGTGAAAGTAAGACAAAACACATCGGGTGCAAAAATGGGGCTGAACAACCAGTGGATACAAGGGGATAGATGTTGGCAGGATGAACGTGAACTGAAACAGCAAAAGAGAAAACAATCTAATAGAGAATCTGCTAGGAGATCAAGGTTACGCAGACAGGCTGAGTGTGAAGAATTGCAGAAAAGGGTGGAGACGTTGGGTGATGAGAATCGAACTCTAAGGGAAGAGCTGCAAAGGCTCTCTGAAGAATGTGAGAAACTTGAGTCACAGAACAGTTCCGTCAAGGAAGAGTTGGAACATTTATGTGGCTCCAATGCAGTTGCTAACCTTGAATAG 1059 0.4636 MGTGEEITSKPVTSVQYPSSPSKYEMPATPSYHDWASTMQVSAYNHAYYGPGATPPPFFPPAVASPTPHPYLWGSKHPLISPYGTPVPYAAIYPSGVYAHPDMHTAPSTAHVNPDLEGKVPGAKDQGPAKKAKETPGTTGWKPADTGNAGSALGNDVISQSSGNVSEGSSDASGEDTSNQQERTGNRKERCDQMFADGANSENDTPGANNQYSTPGKPVATVRATNLNIGMELWDASSTSTGVKVRQNTSGAKMGLNNQWIQGDRCWQDERELKQQKRKQSNRESARRSRLRRQAECEELQKRVETLGDENRTLREELQRLSEECEKLESQNSSVKEELEHLCGSNAVANLE* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00409 352 PANTHER G-BOX-BINDING FACTOR 3-RELATED 1 344 IPR044827 GO:0003700|GO:0006355|GO:0043565
Pte12g00409 352 MobiDBLite consensus disorder prediction 104 218 - -
Pte12g00409 352 Pfam bZIP transcription factor 270 332 IPR004827 GO:0003700|GO:0006355
Pte12g00409 352 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 277 292 IPR004827 GO:0003700|GO:0006355
Pte12g00409 352 MobiDBLite consensus disorder prediction 1 27 - -
Pte12g00409 352 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 272 335 IPR004827 GO:0003700|GO:0006355
Pte12g00409 352 MobiDBLite consensus disorder prediction 152 180 - -
Pte12g00409 352 MobiDBLite consensus disorder prediction 181 195 - -
Pte12g00409 352 Coils Coil 297 338 - -
Pte12g00409 352 SUPERFAMILY Leucine zipper domain 273 330 IPR046347 GO:0003700|GO:0006355
Pte12g00409 352 MobiDBLite consensus disorder prediction 198 218 - -
Pte12g00409 352 MobiDBLite consensus disorder prediction 1 26 - -
Pte12g00409 352 CDD bZIP_plant_GBF1 275 325 IPR045314 GO:0003700|GO:0006355
Pte12g00409 352 Gene3D - 273 327 - -
Pte12g00409 352 SMART brlzneu 270 334 IPR004827 GO:0003700|GO:0006355
Pte12g00409 352 Pfam G-box binding protein MFMR 1 103 IPR012900 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00409 Pte-Chr12 3394911 3398263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00409 1 352 bZIP Transcription Factor Family AT4G36730 48.883 5.87e-86 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pte12g00409 MFMR 6.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00409 K09060 - qsa:O6P43_024732 364.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00409 12 3394911 3398263 Pte12g00409 12 3394911 3398263 RCT
Pte14g00919 14 30913268 30917424 Pte12g00409 12 3394911 3398263 RCT