Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00408 ATGACAACATCCATTAATCAAAACATTGAAGATCAGATGTTGTTTATCTCTCAGCTGTGTCCCGGTACATCAAAACAATTGGCGGCAGCCCAACAAGGTGAGTCAAAGAGAAAACGCCGGCGCAAGAAGAGCAAGAGAGGAGAGAACGAGAGCGAGGGTTCGAAGAAAAGGAAGCTTAGTGCAGAACAAGTCAAGCTTCTGGAGATGAACTTTAGGAAAGAACGCAAGTTAGAGTCTGAGAGGAAAGACAGGTTAGCTTCTGAGTTGGATCTTGACCCTCGTCAGGTTGCTGTTTGGTTTCAGAATCGAAGGGCTCGTTGGAAGAACAAGAAGCTAGAGGAAGAGTACTCCCAGCTCAAGATGCTCCATGAAACAGTAGTTCTTGACAAATGTCACCTTCAATCTGAGGTCATAAAGCTAAAGGAGGAGCTGTCTCAAGCAGGGAAGGAGATTAAGCGGTTGTCAGAAAAGGTTGATGCTGTCCCAAGCAACAGTCCATGTTCATCTCTTACTGTGGAGAACATGGATCCACCATTTTTAGGAGAGTTTGGAGTGGAATACGAGGATGTATTTTACATGCCAGAGACGAACTACATGAATGACATCGATTGGTTTGGTCTATGCATGTAA 630 0.446 MTTSINQNIEDQMLFISQLCPGTSKQLAAAQQGESKRKRRRKKSKRGENESEGSKKRKLSAEQVKLLEMNFRKERKLESERKDRLASELDLDPRQVAVWFQNRRARWKNKKLEEEYSQLKMLHETVVLDKCHLQSEVIKLKEELSQAGKEIKRLSEKVDAVPSNSPCSSLTVENMDPPFLGEFGVEYEDVFYMPETNYMNDIDWFGLCM* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00408 209 Coils Coil 137 157 - -
Pte12g00408 209 FunFam homeobox-leucine zipper protein ATHB-40 49 118 - -
Pte12g00408 209 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Pte12g00408 209 MobiDBLite consensus disorder prediction 45 59 - -
Pte12g00408 209 CDD homeodomain 55 111 IPR001356 GO:0003677
Pte12g00408 209 SMART HOX_1 53 114 IPR001356 GO:0003677
Pte12g00408 209 Pfam Homeodomain 55 109 IPR001356 GO:0003677
Pte12g00408 209 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Pte12g00408 209 SUPERFAMILY Homeodomain-like 54 118 IPR009057 -
Pte12g00408 209 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 34 158 IPR045224 GO:0003700
Pte12g00408 209 Coils Coil 102 122 - -
Pte12g00408 209 MobiDBLite consensus disorder prediction 25 59 - -
Pte12g00408 209 Gene3D - 47 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00408 Pte-Chr12 3390015 3391158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00408 6 210 Homeobox Transcription Factor Family AT2G18550 51.584 1.08e-68 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Pte12g00408 Homeodomain 2.7e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00408 K09338 - tcc:18610975 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00408 12 3390015 3391158 Pte12g00408 12 3390015 3391158 RCT