Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00402 ATGGCCAGTGGTTTTGAGGAATCAACAAGTGCTACAGCCAATAACCCCTCTTACTCTACCAATGGTATCAACGACGCTGGAGATTTTGAATGCAATATTTGCTTCGAATTGGCTCAAGACCCAGTTGTGACTCTTTGTGGTCACCTCTACTGTTGGCCATGTCTCTACAGATGGCTTCATCACCATTCACAATGTCACGAATGCCCTGTTTGCAAGGCCCTAATAGAGCAGGAGAAAATAGTCCCTTTATATGGAAGGGGCAAGACACAGACTGACCCCAGGTCTAAATCATATCCTGGCATGGACATTCCTCATCGTCCCAATGCCCAGAGGCCTCAAACAGCTCCTCCGCCAGGGACTAATGAATATAGCAATTTTGGTTTTGGTTTCATGAGTGGATTTGTACCCATGGCTACAGCTAGATTGGGCAACTTCGCACTTGCTACAGCCGTTGGTGGTATATTTCCATCTATATTCAACATTCAGGTCCATGGCTTCCCAGCTGCCTCAGCTAATGGAGTTACTCCTGGTTTGCCATTTGGATTGCACGCCTATAATGGAGTATATGGCCATGGAGCGGCACAGCCTATCAATCCTGAGCAGCAAATGCAGCAACGGCATGATGATACTATGTTGAAGAATATATTTCTTACGATCGGTATCTGTGTCTTACTTTTTGTTCTCTCATGGTAA 693 0.456 MASGFEESTSATANNPSYSTNGINDAGDFECNICFELAQDPVVTLCGHLYCWPCLYRWLHHHSQCHECPVCKALIEQEKIVPLYGRGKTQTDPRSKSYPGMDIPHRPNAQRPQTAPPPGTNEYSNFGFGFMSGFVPMATARLGNFALATAVGGIFPSIFNIQVHGFPAASANGVTPGLPFGLHAYNGVYGHGAAQPINPEQQMQQRHDDTMLKNIFLTIGICVLLFVLSW* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00402 230 Pfam Zinc finger, C3HC4 type (RING finger) 29 76 - -
Pte12g00402 230 MobiDBLite consensus disorder prediction 86 118 - -
Pte12g00402 230 SMART ring_2 31 71 IPR001841 -
Pte12g00402 230 ProSiteProfiles Zinc finger RING-type profile. 31 72 IPR001841 -
Pte12g00402 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 17 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
Pte12g00402 230 CDD RING-HC_AtRMA-like 29 73 - -
Pte12g00402 230 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Pte12g00402 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 97 IPR013083 -
Pte12g00402 230 SUPERFAMILY RING/U-box 28 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00402 Pte-Chr12 3339740 3341446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00402 20 228 C3H Transcription Factor Family AT2G23780 54.839 1.82e-78 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00402 K10666 - mnt:21392517 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte2g00319 2 2439924 2441205 Pte12g00402 12 3339740 3341446 RCT
Pte12g00402 12 3339740 3341446 Pte12g00402 12 3339740 3341446 RCT
Pte1g02614 1 46467433 46471693 Pte12g00402 12 3339740 3341446 RCT
Pte12g00402 12 3339740 3341446 Pte2g00319 2 2439924 2441205 RCT