Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00401 ATGGCAGCCTTCTCCTCAAACTTTAATTTGGCCATGTTCATGTTCTTGACCAGTGTCTGTATTGGAGCTGAACCTCCTTCAAAAAACTCAACTGATAGATACTTTGCATGTCCTGCAGATTCACATATTTCTTGTGAAGCATACCTCACATATTTAGCCCGGTCTTCTGGGGGTTTGAGTGTTTTAAATGTGTCTAGATTGTTTGACACAAGTCCTGAATCAATTGCAAAAGCAAGCAGTTTAGTCTCACAGACTGACTTGCTTGATCCAGGCCAAACCTTACTGATACCTGTCACCTGTGCTTGCGCTGGAAACTATTCCTTTGCCAAAACCACTTACAAGATCGAGGAAGGTGACAGCTACTACTTGCTTTCAATTGGTGCCTTTGAGAATCTAACCCACTGGGAAGCAGTTCAAGAATTCAACCCAAGTCTGATCCCTACTCTACTGAAAATTGGAGAAGAAATATCTATCCCTTTGTTCTGCAGGTGCCCCTCGAAGACTCATTCTGTTAAGGGCGTAAAGTATTTTATCACTTATGTATGGCAACACAATGATGATGTTAGACGTGTGAGTACAAAATTCAATACTTCTTCTGCAGAAATATTGGCTAACAACAAGCACAACAATTCACACTTCGAAGTAGACCAAGCCATTGCAATCCCAGTAGCGCGCTTGCCAGATTTTTCTCATCGTCACTCACATCAGGGAAGGAAAAGCTCGAAACGTATTTGGACTGTTGTTGCAATCGCCCTGGGATGCATTATTGTGATTGCAGTTTTTGTGATAGTACTGCTTTTTATTTATCGAAAGAGAAAGATAAAGAAGGCGGAGCCTTCGGAGAGGGACGTTTCTTTGGAAAATATTGACAAGCTGCTGTCGGGAGTTTCAGGCTATGTAAGCAAGCCTTTAATGATTGATATCAATCTAATTTTGGAAGCTACGGCGAACTTCAGCGAATCTAGTCGGATTGGGGGTTCTGTGTATAGAGCTAGAGTGAATGGCCAGGTATTGGCTGTGAAGAAAATCGAGGAAGATGTTTCAGAGGAGCTTCAAATTCTACAGAAAGTCAACCATGGAAATCTGGTAAAACTAATAGGCGTCTCATCTGATTCTGATGGTAATCGTTTCATTTTGTATGAATATGTTGAAAATGGTTCTCTTGACAAGTGGCTGCGTTACAAATCATCATCCACTTCAGACCACAGGGGCTATCTCTCATGGAATGAGAGGTTGATGGTAGCGCTGGATGTAGCCATGGGCCTGCAGTATCTGCATGAGCACACCCTCCCCAGAATTGTTCACAGGGACATCAGAACCAGTAACATACTCCTCGATTCGAAGTTTAAGGCTAAGATAGCGAATTTCTCCTTGGCCAGAGCCTCCACAAATCCAATTTTGCCAAAAATTGATGTTTTTGCATTTGGGGTTGTTCTCATGGAGTTGCTTTCTGGTAAGAAAGCTATGAGAACAAAAGAGAACGGTGAGGTTGCCATGCTGTGGAAGGAAATGAAAGCAATATTTGAAAATGGAGACAAGGAGGATAAGCTAAGAAGATGGATGGATCCAAACTTGGGAAGCAACTACCCCATCGATGATGCTCTGAACTTGGCAGCTTTATCAATGGCCTGCACAGTGGAGAAGTCTTTGTCAAGACCAAGCATGGAGGATATTGTTCTTGGACTCTCTGTACTCATCCAGTCATCTCCTACTGCTGCATCATTGGAAAGATCATACACTCGCATAGATGCAATGAATGATGTCAATGCTCGCTGA 1776 0.4262 MAAFSSNFNLAMFMFLTSVCIGAEPPSKNSTDRYFACPADSHISCEAYLTYLARSSGGLSVLNVSRLFDTSPESIAKASSLVSQTDLLDPGQTLLIPVTCACAGNYSFAKTTYKIEEGDSYYLLSIGAFENLTHWEAVQEFNPSLIPTLLKIGEEISIPLFCRCPSKTHSVKGVKYFITYVWQHNDDVRRVSTKFNTSSAEILANNKHNNSHFEVDQAIAIPVARLPDFSHRHSHQGRKSSKRIWTVVAIALGCIIVIAVFVIVLLFIYRKRKIKKAEPSERDVSLENIDKLLSGVSGYVSKPLMIDINLILEATANFSESSRIGGSVYRARVNGQVLAVKKIEEDVSEELQILQKVNHGNLVKLIGVSSDSDGNRFILYEYVENGSLDKWLRYKSSSTSDHRGYLSWNERLMVALDVAMGLQYLHEHTLPRIVHRDIRTSNILLDSKFKAKIANFSLARASTNPILPKIDVFAFGVVLMELLSGKKAMRTKENGEVAMLWKEMKAIFENGDKEDKLRRWMDPNLGSNYPIDDALNLAALSMACTVEKSLSRPSMEDIVLGLSVLIQSSPTAASLERSYTRIDAMNDVNAR* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00401 591 SMART tyrkin_6 318 562 IPR020635 GO:0004713|GO:0006468
Pte12g00401 591 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 19 571 - -
Pte12g00401 591 Gene3D Phosphorylase Kinase; domain 1 296 382 - -
Pte12g00401 591 Gene3D Transferase(Phosphotransferase) domain 1 383 463 - -
Pte12g00401 591 Pfam Protein tyrosine and serine/threonine kinase 344 462 IPR001245 GO:0004672|GO:0006468
Pte12g00401 591 Pfam LysM domain 65 97 IPR018392 -
Pte12g00401 591 SUPERFAMILY Protein kinase-like (PK-like) 302 560 IPR011009 -
Pte12g00401 591 ProSitePatterns Tyrosine protein kinases specific active-site signature. 433 445 IPR008266 GO:0004672|GO:0006468
Pte12g00401 591 ProSiteProfiles Protein kinase domain profile. 286 565 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00401 591 Gene3D Transferase(Phosphotransferase) domain 1 464 585 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00401 Pte-Chr12 3336144 3338383 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00401 34 569 Receptor kinase-like Gene Family AT3G21630 30.808 2.01e-75 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Pte12g00401 PK_Tyr_Ser-Thr 9.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00401 - - qsa:O6P43_033758 670.618