LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pte12g00400	ATGGACCTAGCGGAACTAACCACTGACGAGGTTCTGAAGAGAGACATTCCATGGGAGACATATATGTCTACCAAGCTCATCTCTGGAACCTCCCTTCAGCTTTTGAGGCGCTATGACAATAGATCGGAGAGTCACAGAGCACAATTGCTCGATGAAGACGGACCTGCTTACGTGCGAGTTTTCGTCAGCATTTTGCGTGACATTTTTAAGGAGGATACTGTGGAATATGTTCTTGCCTTGATCGATGAAATGCTTTCAGCGAACCCAAAAAGAGCGAGGCTGTTTCATGAAAAATTGCTCTGGAGAGGAAATTGGTTTATACAAGAGAAGAGTTGTAAGATACTTGCTCTTATAGTTAGCGCAAGACCAAAAGGTCAGAATGGCATTATTTCAAGTGGAGAGGCCTCTATTTCAAAGCAAGTAACCACAATTGATGATGTTTTGAATGGGCTGGTGAAATGGCTGTGTGCTCAGCTAAAGAATCCTTCCCATCCCAGTCGTGGTGTCCCTAGTGCCATCAACTGCCTTGCTACCCTGCTCAAAGAACCTGTTGTGAGGTCTTCCTTTGTTCAAGCAGATGGAGTGAAACTGTTGGCCCCATTAATTTCTCCAGCTTCCACACAACAGTCCATTCAGCTCCTTTACGAAACATGTCTCTGTGTCTGGCTTTTATCTTACTATGAGCCTGCAATTGAATATTTGGCTACGTCAAGAACTCTTCGTCGACTCATTGAGGTTGCCAAGAGTTCCACAAAGGAAAAGGTTGTTAGAGTTGTGGTATTGACCCTTAGAAACCTGCTCTCTAAAGGCACGTTGGGTGCTCAAATGGTCGACTTTCAACTTCCACAAGTTATCCAGAACTTGAAAGCACAAGCATGGAGCGATGAGGATCTGCTTGATGCACTGAACCAGTTGGAGGAAGGACTCAAGGATAACATTAAGAAACTAAGTTCTTTTGATAAGTACAAGCAAGAGGTCCTCCTCGGCCAGTTAGACTGGTCTCCCATGCACAAGGATACTATGTTCTGGCGTGAAAATATTACACAGTTCGAAGAAAATGATTTTCAGGTTTTGAGGGTTCTGATGACAATCTTGGACACATCCAGTGATCCGAGGGCTCTTGCTGTATCTTGCTTTGACCTTTCACAGTTCATCCAACACCATCCAGCAGGGAGAGTCATCGTCACTGATCTCAGAGCAAAGGAGCGAGTGATGAAGTTAATGAATCACGAGAATGCTGAGGTCACAAAGAACGCATTGCTTTGCATTCAAAGGCTTTTCTTAGGAGCCAAGTATGCCAGCTTCTTGCAGGCCTAA	1317	0.4457	MDLAELTTDEVLKRDIPWETYMSTKLISGTSLQLLRRYDNRSESHRAQLLDEDGPAYVRVFVSILRDIFKEDTVEYVLALIDEMLSANPKRARLFHEKLLWRGNWFIQEKSCKILALIVSARPKGQNGIISSGEASISKQVTTIDDVLNGLVKWLCAQLKNPSHPSRGVPSAINCLATLLKEPVVRSSFVQADGVKLLAPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEYLATSRTLRRLIEVAKSSTKEKVVRVVVLTLRNLLSKGTLGAQMVDFQLPQVIQNLKAQAWSDEDLLDALNQLEEGLKDNIKKLSSFDKYKQEVLLGQLDWSPMHKDTMFWRENITQFEENDFQVLRVLMTILDTSSDPRALAVSCFDLSQFIQHHPAGRVIVTDLRAKERVMKLMNHENAEVTKNALLCIQRLFLGAKYASFLQA*	439

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Pte12g00400	438	PIRSF	V-ATP_synth_H	1	437	IPR004908	GO:0000221\|GO:0046961\|GO:1902600
	Pte12g00400	438	Gene3D	-	329	430	IPR038497	-
	Pte12g00400	438	Pfam	V-ATPase subunit H	5	309	IPR004908	GO:0000221\|GO:0046961\|GO:1902600
	Pte12g00400	438	PANTHER	V-TYPE PROTON ATPASE SUBUNIT H	2	437	IPR004908	GO:0000221\|GO:0046961\|GO:1902600
	Pte12g00400	438	ProSitePatterns	Cytochrome b5 family, heme-binding domain signature.	384	391	IPR018506	GO:0020037
	Pte12g00400	438	SUPERFAMILY	ARM repeat	8	428	IPR016024	-
	Pte12g00400	438	Gene3D	-	3	317	IPR011989	-
	Pte12g00400	438	Pfam	V-ATPase subunit H	315	427	IPR011987	GO:0000221\|GO:1902600
	Pte12g00400	438	SMART	arm_5	227	268	IPR000225	GO:0005515
	Pte12g00400	438	SMART	arm_5	388	428	IPR000225	GO:0005515
	Pte12g00400	438	SMART	arm_5	181	226	IPR000225	GO:0005515
	Pte12g00400	438	FunFam	V-type proton ATPase subunit H	329	430	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Pte12g00400	Pte-Chr12	3330790	3334862	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pte12g00400	1	439	Primary Pumps ATPases(2)	AT3G42050	78.319	0.0	730

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pte12g00400	K02144		-	qsa:O6P43_024716	749.584