Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00399 ATGGGAATAGTAACACCACCACTTCCAGCAATCGTTGCTCATCACTCAAAGTCGAAGCCTCAACATTCATTTTCAATCTTGGAGAAGTCTAATTCTATGTCCCAAGATTACCATCAAGGAATCTTCAGCTTCTCTAATGGGTTCGAGAGATCTCCTATAACTCAACAAGAACACCATCATCATCAGCAGCAGCACATACCCCAACAGATCCGGAGGGACAAAGGCAGAGTGCAGGGCTTTGAAGCCGCGCCCCCACCTTTAGTTGGTATAGAAGAGGAGGAATCCGGAGGACTTCCTGTGTATGAGACGACTGGTATGTTATCAGAGATGTTCAACTTCCCTCCTGCTGGGGCCACAGCAGTTCAATTATTGGATCCACCCACCGCAACGAGTTACAGGTCACCACGGCCGCAACCAGCCGCCATCGGAGTAGGTCAAGAGTGGTACGGAAACAGACACGGTTTGATGAGTGGATTTGGACAGCAGGAAGAAGCAAAGGGTCACCGTAGTATATCTCAGCAACACCATCATCAGATTCCAAGCATTAATGCAGACTCAGCAGCTGCCATGCAGCTTTTTCTGATGAATCCACAAGCCAGATCGCCTTCTCCACCACCACATCATAATCACGGTACAAATGCTCCGGTGACTTCAACACTTCACATGTTGCTTCCCAATCCACAATCTTCTTCTCTGCAAGGGTTCACAGGGACTGCTTCCTGTGCAGGAGGTGGTGCTTTTGGACAATTCACATGGGTTCCTGATTCTGCACCCGATGATAATACCACGACCTCTGAAATTGGGCGGGTTGTGGAAGGTCAAGGCCTGTCCTTGTCACTGTCTTCTTCATTGCAACACTTGGAAGCAGCCAAAGCTGAGGAATTGAGAATGGGTGACAGTGGATTCTTATACTATAATCAAGGACCTGGAGGAAGTGGAAGCTCATCGGCTGCGCAGTACCCGTACAAGAATTTGGGAAGCCATAATCCACAAGCACTGAATATACAAGGGCATGTGACATCGAACCACCAAGTACATGTGGGGTTCGGATCATCATCCTTAGGCGTAGTTAATGCTCTTAGAAATTCAAAGTATTTGAAGGCAGCGCAAGAATTGCTTGAAGAGTTTTGCAGTGTCGGTAGAGGTCCACTGAAGAAGAACAAGCTTGGTAGACAACATAGTAACCCTAATTCCAATCCTGGCCCTTCAACTTCATCCAAGGATGTTCCTCCTTCGTCAGCTGCTGATAGAATAGAACATCAACGAAGGAAAGTCAAACTTCTAGCCATGCTTGATGAGGCACAAACCATTAGAGAAAAGCCGGCTGTTACAGACAAGGTGGACCAGAGGTACAACCATTACTGTGAACAGATGCAAATGGTGGTGAACTCATTTGACATGGTTATGGGATTTGGTGCAGCATTGCCTTACACTGCGCTAGCGCAGAAGGCCATGTCAAGACATTTCCGTTGCTTAAAGGATGCAATAACAGCTCAATTGAAGCATAGCTGCGAGCTACTAGGAGAGAAAGATGGGGCTGGAACCTCAGGATTAACGAAAGGAGAGACTCCTAGGCTGAAATTGCTGGAACAAAGCCTAAGACAACAAAGATCCTTTCATCAAATGGGCATGATGGAACAAGAAACATGGAGACCCCAGCGAGGATTGCCTGAACGATCTGTCAACATTTTAAGGGCCTGGCTTTTTGAGCACTTTCTTCACCCGTATCCAAGCGATGCGGATAAGCATGTTTTGGCTCGACAAACTGGTTTATCGAGAAATCAGGTGTCAAACTGGTTCATTAATGCTAGGGTTCGGTTGTGGAAACCGATGGTAGAAGACATGTACCAACAGGAAGCCAAAGATGAAGAGGGTACAGATGAGGACACACAGAAGAACCATAGTTATGACAACAGCAGTGGCTATGCACAAACTCCAACGTCCTCGTCAAGAACAGCAACAACACAACCCCTACCATCAACGACAGCAATGATCCAACAAACGACAGCAGCAACATCAACCACTGCTGCGCCAACGGGCAAGAGATCAGATATCAATGCAACCGAAAGCGACCCTTCTTCGCTCAATGCAATCAATAGACAATGCTTCTCGGAAAACCAAGCAAAGCAATCCAACTGTTCCCTGAGGACCATGACCCCCATTATGGTTCACACAACCACCACCACCTCCTCTGAGATGGTACCACCCGGGTCACAACGTTTTGCTACACCCCATGACTCAGAGCTGGCTGCCGGTCATACAGGTAAGCTTGGCAGCATGGTTTCGAATGATTACGGGGCTGCTGACATGGGATCTACTCTCATTAGGTACGGGACCACTCCGGGTGACGTGTCTCTCACCCTAGGGCTACGTCATGCTGGAAACGCGCCTGAGAAGTCTTCAGCTTTCTCCCTGAGAGACTTTGGCGGAATTTAG 2436 0.4791 MGIVTPPLPAIVAHHSKSKPQHSFSILEKSNSMSQDYHQGIFSFSNGFERSPITQQEHHHHQQQHIPQQIRRDKGRVQGFEAAPPPLVGIEEEESGGLPVYETTGMLSEMFNFPPAGATAVQLLDPPTATSYRSPRPQPAAIGVGQEWYGNRHGLMSGFGQQEEAKGHRSISQQHHHQIPSINADSAAAMQLFLMNPQARSPSPPPHHNHGTNAPVTSTLHMLLPNPQSSSLQGFTGTASCAGGGAFGQFTWVPDSAPDDNTTTSEIGRVVEGQGLSLSLSSSLQHLEAAKAEELRMGDSGFLYYNQGPGGSGSSSAAQYPYKNLGSHNPQALNIQGHVTSNHQVHVGFGSSSLGVVNALRNSKYLKAAQELLEEFCSVGRGPLKKNKLGRQHSNPNSNPGPSTSSKDVPPSSAADRIEHQRRKVKLLAMLDEAQTIREKPAVTDKVDQRYNHYCEQMQMVVNSFDMVMGFGAALPYTALAQKAMSRHFRCLKDAITAQLKHSCELLGEKDGAGTSGLTKGETPRLKLLEQSLRQQRSFHQMGMMEQETWRPQRGLPERSVNILRAWLFEHFLHPYPSDADKHVLARQTGLSRNQVSNWFINARVRLWKPMVEDMYQQEAKDEEGTDEDTQKNHSYDNSSGYAQTPTSSSRTATTQPLPSTTAMIQQTTAATSTTAAPTGKRSDINATESDPSSLNAINRQCFSENQAKQSNCSLRTMTPIMVHTTTTTSSEMVPPGSQRFATPHDSELAAGHTGKLGSMVSNDYGAADMGSTLIRYGTTPGDVSLTLGLRHAGNAPEKSSAFSLRDFGGI* 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00399 811 Pfam Homeobox KN domain 567 606 IPR008422 GO:0003677|GO:0006355
Pte12g00399 811 MobiDBLite consensus disorder prediction 617 693 - -
Pte12g00399 811 Gene3D - 553 615 - -
Pte12g00399 811 MobiDBLite consensus disorder prediction 617 634 - -
Pte12g00399 811 CDD homeodomain 550 611 IPR001356 GO:0003677
Pte12g00399 811 SMART HOX_1 550 614 IPR001356 GO:0003677
Pte12g00399 811 FunFam BEL1-like homeodomain protein 4 553 615 - -
Pte12g00399 811 MobiDBLite consensus disorder prediction 635 693 - -
Pte12g00399 811 ProSiteProfiles 'Homeobox' domain profile. 547 610 IPR001356 GO:0003677
Pte12g00399 811 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 221 635 - -
Pte12g00399 811 SMART prehox3 354 498 IPR006563 -
Pte12g00399 811 MobiDBLite consensus disorder prediction 384 417 - -
Pte12g00399 811 Pfam Associated with HOX 360 497 IPR006563 -
Pte12g00399 811 MobiDBLite consensus disorder prediction 390 411 - -
Pte12g00399 811 SUPERFAMILY Homeodomain-like 551 617 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00399 Pte-Chr12 3304008 3309630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00399 30 597 Homeobox Transcription Factor Family AT4G36870 50.399 5.55e-150 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pte12g00399 POX 2.3e-46 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00399 - - vri:117912563 991.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00399 12 3304008 3309630 Pte12g00399 12 3304008 3309630 RCT
Pte14g00928 14 30983276 30989619 Pte12g00399 12 3304008 3309630 RCT