Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00397 ATGCTTATGCAGTGTATTCTTTGTCGGAGTAATTTTGGGAATAAAGAACAGTTACTGTCACATGTCCTTTCAAATCATCCAACTGATCTTAGACTCTCAGGTACACCTCAGCAGCAAAGTTTTGCCAATGGTGAGGATTCTCCAGTAATACCTGAGCAAGGGAATTCAACCTCTATGGACAACAATTCTGAGAATCCTGGTGGTTCTCGTAGGTACATCTGCAAGTTTTGTGGATTGAAGTTTGATTTACTACCAGATCTAGGTCGTCACCATCAAGCTGCTCATATGGGGCCTAATTTAATTGGCAGCCGCCCCTCAATGGCAAAGAGAGGTGTTCGTTATTTTGCATACAGATTGAAATCTGGGAGACTTAGTCATCCTAAATTTAAGAGTAGTTTGGCTGCTGTATCAAGTAGGATTAGAAATAGAGCTGGTGCAAGTTTAAGACAGCGTATCCAAGCATGTAAGCAACTAAGCACGGAGGGTGTAACAATACAACCTCAGCCAATGGAGACGGATGTTGGTAGGTTGGCCGAATTTGGTTGCTCATCAGTTGCTGATATTTTACGTCCTGAGCTTCAGAAGACAAAACCTCGGCCAAACAATCATGACATCCTATCCATTGCTCAATCTGCTTGCTGTAAGGTAAATCTGAAATCCTTGCTAGACGTGAAATATGGAGTCCTGCCTGAGAGTTTATATCTTAGGGCAGCAAAACTATGCAGTGAGCAGAATATTCAAGTGAACTGGCACCTGGACGGGTTTGCTTGTCCCAAAGGTTGCAAACCTTTGGAGGAGAAAGTGGTGGTTCCTCCATTGTCATCTCTTCCTAATGGTAATGCTTCTATTAGGCAAAAATATACATGCCTATCAAGTCCTGTGAGTGATGAGTGGGAGACAGATGAGAGCCATTGTGTCATTAGTTCAGATCATCTGAGGCCAGGATCCTCCCAGAAAGGCATTGTTTTGTGTGATGATATAAGCTTTGGCCAGGAATCAGTTCCTGTTGCTTGCGTAATGGATGAAGAACTTTTGGATTCTCTTGATATTCAAGATGATGAATCAAAGTTTTCTATGCCGTGGGAGAGTTTTACCTATGTCACAAAGCCAATGCTTGTGCAAACATGTGATCTTGATATAGAGAGTTTTCAACTGGGATGTTCCTGCTCTTCTTCAACCTGCCGTGCTGAGACCTGTGATCATGTATACATCTTCAATTGCGACTTCGAAGACGCAAAAGATACTTCTGGCAAATCCATGCATGGCAGGTTTCCTTATGATGAGAATCGCCGGATTATATTGGAGGAAGGTTACCTTGTGTATGAGTGCAATAACAGGTGCAGCTGCAGTAGAGCCTGTCCGAACAGGGTTTTACAGAACGGAGTACAAGTAAAATTGGAAGTCTTCAGAACAGAAAACAAGGGTTGGGGAGTAAAGGCTGGTGAGCCTATCCTGCGTGGAACATTTATATGTGAGTATATTGGAGAGGTTATAGATGAGCTTGAAGCAACTGACAGGCGAAACAGGCGTGGTGCAGAAGGTTGCACATATTTTTATGATGTTGATGCTCATAATAATGATATGAGCAGATTCATTGAAGGGCAGGCTAGATATGTGATTGATGCTACCAAGTATGGAAATGTTTCTCGTTTCATCAATCACAGCTGCTCGCCAAATCTTGTGAATTACCAAGTGCTTGTGGAAAGCATGGACAGTCCCCGTGCACACATCGGTCTCTATGCGAATCGGGATATAGCCATGGGTGAAGAGCTGACATATGACTACCGGTACAGCCTCATTGCCGGAGAAGGATGTCCTTGCCACTGTGGATTTTCAAAGTGCAGAGGCCGCCTTTATTGA 1860 0.4344 MLMQCILCRSNFGNKEQLLSHVLSNHPTDLRLSGTPQQQSFANGEDSPVIPEQGNSTSMDNNSENPGGSRRYICKFCGLKFDLLPDLGRHHQAAHMGPNLIGSRPSMAKRGVRYFAYRLKSGRLSHPKFKSSLAAVSSRIRNRAGASLRQRIQACKQLSTEGVTIQPQPMETDVGRLAEFGCSSVADILRPELQKTKPRPNNHDILSIAQSACCKVNLKSLLDVKYGVLPESLYLRAAKLCSEQNIQVNWHLDGFACPKGCKPLEEKVVVPPLSSLPNGNASIRQKYTCLSSPVSDEWETDESHCVISSDHLRPGSSQKGIVLCDDISFGQESVPVACVMDEELLDSLDIQDDESKFSMPWESFTYVTKPMLVQTCDLDIESFQLGCSCSSSTCRAETCDHVYIFNCDFEDAKDTSGKSMHGRFPYDENRRIILEEGYLVYECNNRCSCSRACPNRVLQNGVQVKLEVFRTENKGWGVKAGEPILRGTFICEYIGEVIDELEATDRRNRRGAEGCTYFYDVDAHNNDMSRFIEGQARYVIDATKYGNVSRFINHSCSPNLVNYQVLVESMDSPRAHIGLYANRDIAMGEELTYDYRYSLIAGEGCPCHCGFSKCRGRLY* 620
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00397 619 ProSiteProfiles SET domain profile. 464 596 IPR001214 GO:0005515
Pte12g00397 619 SMART set_7 464 602 IPR001214 GO:0005515
Pte12g00397 619 ProSiteProfiles Zinc finger C2H2 type domain profile. 72 100 IPR013087 -
Pte12g00397 619 Pfam Zinc finger C2H2-type, 3 repeats 1 96 IPR040689 -
Pte12g00397 619 ProSitePatterns Zinc finger C2H2 type domain signature. 74 95 IPR013087 -
Pte12g00397 619 ProSiteProfiles Post-SET domain profile. 603 619 IPR003616 -
Pte12g00397 619 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 1 619 - -
Pte12g00397 619 SMART preset_2 324 448 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pte12g00397 619 SMART c2h2final6 72 95 IPR013087 -
Pte12g00397 619 SMART c2h2final6 3 26 IPR013087 -
Pte12g00397 619 SUPERFAMILY SET domain 316 609 IPR046341 -
Pte12g00397 619 Pfam Pre-SET motif 327 456 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pte12g00397 619 ProSiteProfiles Pre-SET domain profile. 385 461 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Pte12g00397 619 MobiDBLite consensus disorder prediction 29 66 - -
Pte12g00397 619 Gene3D SET domain 316 619 IPR046341 -
Pte12g00397 619 ProSitePatterns Zinc finger C2H2 type domain signature. 5 26 IPR013087 -
Pte12g00397 619 Pfam SET domain 475 595 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00397 Pte-Chr12 3290000 3292756 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00397 1 618 C2H2 Transcription Factor Family AT2G23740 53.185 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Pte12g00397 Pre-SET 2.2e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00397 - - qsa:O6P43_033764 857.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00397 12 3290000 3292756 Pte12g00397 12 3290000 3292756 RCT