Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00378 ATGCCTACTGAAAATACCAACGAGACACGCCGACCATCCAAATTCCAAAACCCGGGCGCTCCTCCCCAGGAACAAGAGCATCTTCCATGTCCTCGCTGTGACTCGACTAACACTAAGTTCTGCTACTACAACAACTACAATTTCTCTCAGCCCCGCCACTTCTGTAAGTCTTGTCGCCGTTACTGGACCCATGGTGGCACCCTCCGTGATATTCCCGTAGGCGGTGGCATCCGTAAAAATGCCAAGCGCTCTCGTAGCATAGCTTCGACCTCTCCTTCTACTGTCTTATCGCATCCACTTCAGGACCAAGCATTGCCTGCCACTGCAACACCATTCTTTGTCTCCCTTTCAGGTATTCCACCTGCTGCTATGCAGCTCGATGCTGCAGTTGCCAGCTCTGGCAATGGCATTGCGAAACAAAACTTGAATATGTATGGGAGCTTTACATCATTGCTCAACAACACTTCTCAATATCCCGGGTTTGGGCTCGACATGGGTCCCACCGTTGAAGACGTGAGCTTTGAGATGGGTAGAGGTGTTTGGCCCTTCCAACGTGTCGTAGACGGTAGTGTTCACCTCGTTGGCCAGGTCAGATCCACCGGAATCGGCAACGCATGGCAGTTCGAAAATGGGGAAGGTCGGTTTGTGAGCGAAGACTGCTATTCTTAA 669 0.5127 MPTENTNETRRPSKFQNPGAPPQEQEHLPCPRCDSTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGGIRKNAKRSRSIASTSPSTVLSHPLQDQALPATATPFFVSLSGIPPAAMQLDAAVASSGNGIAKQNLNMYGSFTSLLNNTSQYPGFGLDMGPTVEDVSFEMGRGVWPFQRVVDGSVHLVGQVRSTGIGNAWQFENGEGRFVSEDCYS* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00378 222 MobiDBLite consensus disorder prediction 1 20 - -
Pte12g00378 222 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
Pte12g00378 222 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Pte12g00378 222 MobiDBLite consensus disorder prediction 75 95 - -
Pte12g00378 222 MobiDBLite consensus disorder prediction 1 29 - -
Pte12g00378 222 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Pte12g00378 222 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 19 157 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00378 Pte-Chr12 3139954 3140765 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00378 1 222 C2C2-Dof Transcription Factor Family AT3G50410 44.262 2.66e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Pte12g00378 zf-Dof 4.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00378 - - qsa:O6P43_033783 266.929
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00378 12 3139954 3140765 Pte12g00378 12 3139954 3140765 RCT