Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Pte12g00364 | ATGGGTGCTTGTACTTCTAAACCTTCGACAATCCCGTCACCTTCTTCTCCAGATAACACTAACCTTCATCCTACCAAACAAACACCTAACAGGGATAACTCCGTTACACTTAGTGAAGGTACACCTGTATATGCTCCGACCCCCGTTAACCCTAGAAGGGAGAGCCACAAGAGGAATGATTCCGGAGATAATGGAAAGAAGTCTCCTTTCTTTCCGTTTTACAGTCCGAGTCCAGCTCACTACTTGTTCTCAAAGAAGTCACCGGCGAGATCTCCGGCGAATGTGAGCTCCAATTCGACGCCCAAGAGATTTTTCAGGCGGCCTTTCCCGCCGCCTTCACCCGCGAAGCACATACGGTCTGTGCTGGCGAGGAGGCATGGGTCAGTGAAGCCAAATGAGGCCTCAATTCCGGAGGTTGGTGAATCGGAGGCAGTGACTGGGTTGGATAAGAGTTTTGGGTTCTCTAAACATTTTGAGAGTAAGTATGAAATGAGTGATGAGGTTGGTAGAGGACATTTTGGGTATACCTGTGCTGCTAAGATTAAGAAGGGTGAGCTCAAGGGTCAACAAGTAGCTGTCAAAGTCATTCCCAAATCAAAGATGACCACTGCTATTGCCATTGAGGATGTGAGAAGGGAGGTAAAAATACTACGAGCTTTGACTGGACATAAGAATCTTATACGATTCTATGATGCATATGAAGATCATGATAATGTCTACATAGCAATGGAGTTATGTGAAGGAGGAGAGCTTTTAGACAGAATTTTAGCCAGGGGTGGGAAGTACACGGAGGACGATGCAAAGGCAGTCCTGACACAAATACTCAATGTTGTTGCATTTTGCCACCTTCAGGGTGTTGTGCATCGCGATCTTAAACCTGAGAATTTCTTGTTCACATCAAAGGATGAGAACTCAGAGCTTAAGGCTATAGACTTTGGTTTGTCAGATTTTGTAAAGCCAGATGAAAGGCTTAATGATATTGTTGGTAGTGCATACTATGTTGCTCCTGAAGTTCTGCATAGGTCTTACAGTTCAGAGGCTGATGCTTGGAGCATTGGTGTGATTGCATATATCCTATTGTGTGGCAGTCGTCCATTTTGGGCTCGAACAGAGTCTGGAATTTTTAAGGCCGTTTTAAAAGCTGATCCAAGTTTTGATGAACCTCCTTGGCCATCACTTTCTGTAGAAGCAAGAGACTTTGTTAAGCGACTATTAAATAAGGACCCAAGAAAAAGAATGACTGCTGCACAGGCTTTAAGTCATCCTTGGATTAAAAATTATAATAATATGAAAGTGCCCCTGGACATACTAATTTTCAAGCTCATGAAATCCTATATGCGCTCTTCGTCTTTGCGGAAAGCTGCATTAAGGGCTCTCTCTAAAACGTTAACCGCTGATGAATTATTTTATTTGAAGGAGCAGTTTGCATTGCTGGAACCCAACAATAATGGCACTATAAGCTTAGAGAATATCAAAGCGGTCTTGATGAAACATGCAACTGATGCTATGAAGGAATCACGCATTCCTGACTTTTTGGCTGCACTTAATGCTCTGCAATATAGAAGAATGGATTTTGACGAGTTCTGTGCAGCTGCATTGAGTGTTCATCAAATGGAGACTCTTGATAGGTGGGAGCAACATGCACGCTGCGCCTATGAGCTTTTTGAAAAGGATGGAAACAGACCTATAGTCATTGAGGAACTGCCCACGGAACTTGGCCTGGGTCCATCTATTCCTGTTCATGCAGTTCTTCACGATTGGATTAGGCACACAGACGGAAAGCTGAGCTTCCTTGGGTTTGTGAAACTGTTGCATGGTGTATCAAGCAGGAGCCTTGCAAAACCGTAA | 1848 | 0.4389 | MGACTSKPSTIPSPSSPDNTNLHPTKQTPNRDNSVTLSEGTPVYAPTPVNPRRESHKRNDSGDNGKKSPFFPFYSPSPAHYLFSKKSPARSPANVSSNSTPKRFFRRPFPPPSPAKHIRSVLARRHGSVKPNEASIPEVGESEAVTGLDKSFGFSKHFESKYEMSDEVGRGHFGYTCAAKIKKGELKGQQVAVKVIPKSKMTTAIAIEDVRREVKILRALTGHKNLIRFYDAYEDHDNVYIAMELCEGGELLDRILARGGKYTEDDAKAVLTQILNVVAFCHLQGVVHRDLKPENFLFTSKDENSELKAIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYSSEADAWSIGVIAYILLCGSRPFWARTESGIFKAVLKADPSFDEPPWPSLSVEARDFVKRLLNKDPRKRMTAAQALSHPWIKNYNNMKVPLDILIFKLMKSYMRSSSLRKAALRALSKTLTADELFYLKEQFALLEPNNNGTISLENIKAVLMKHATDAMKESRIPDFLAALNALQYRRMDFDEFCAAALSVHQMETLDRWEQHARCAYELFEKDGNRPIVIEELPTELGLGPSIPVHAVLHDWIRHTDGKLSFLGFVKLLHGVSSRSLAKP* | 616 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Pte12g00364 | 615 | ProSiteProfiles | Protein kinase domain profile. | 162 | 424 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pte12g00364 | 615 | FunFam | CDPK-related kinase 1 | 460 | 533 | - | - | |
| Pte12g00364 | 615 | Gene3D | - | 442 | 533 | - | - | |
| Pte12g00364 | 615 | SUPERFAMILY | Protein kinase-like (PK-like) | 160 | 454 | IPR011009 | - | |
| Pte12g00364 | 615 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
| Pte12g00364 | 615 | Gene3D | Phosphorylase Kinase; domain 1 | 155 | 250 | - | - | |
| Pte12g00364 | 615 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 286 | 298 | IPR008271 | GO:0004672|GO:0006468 | |
| Pte12g00364 | 615 | FunFam | Calcium-dependent protein kinase SK5 | 334 | 429 | - | - | |
| Pte12g00364 | 615 | ProSiteProfiles | EF-hand calcium-binding domain profile. | 466 | 501 | IPR002048 | GO:0005509 | |
| Pte12g00364 | 615 | Gene3D | Transferase(Phosphotransferase) domain 1 | 251 | 437 | - | - | |
| Pte12g00364 | 615 | MobiDBLite | consensus disorder prediction | 89 | 103 | - | - | |
| Pte12g00364 | 615 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 142 | 587 | - | - | |
| Pte12g00364 | 615 | FunFam | CDPK-related kinase 3 | 154 | 326 | - | - | |
| Pte12g00364 | 615 | MobiDBLite | consensus disorder prediction | 84 | 115 | - | - | |
| Pte12g00364 | 615 | SMART | serkin_6 | 162 | 424 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Pte12g00364 | 615 | Gene3D | - | 449 | 603 | - | - | |
| Pte12g00364 | 615 | SUPERFAMILY | EF-hand | 452 | 606 | IPR011992 | - | |
| Pte12g00364 | 615 | ProSitePatterns | Protein kinases ATP-binding region signature. | 168 | 194 | IPR017441 | GO:0005524 | |
| Pte12g00364 | 615 | MobiDBLite | consensus disorder prediction | 1 | 70 | - | - | |
| Pte12g00364 | 615 | FunFam | CDPK-related kinase 1 | 155 | 250 | - | - | |
| Pte12g00364 | 615 | CDD | STKc_CAMK | 161 | 423 | - | - | |
| Pte12g00364 | 615 | Pfam | Protein kinase domain | 162 | 424 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Pte12g00364 | Pte-Chr12 | 3021788 | 3026431 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Pte12g00364 | 1 | 612 | EF-hand Containing Proteins | AT3G50530 | 75.000 | 0.0 | 982 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| PK | CAMK_CDPK | Pte12g00364 | Pkinase | 3.3e-70 | CL0016 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Pte12g00364 | K13412 | - | cave:132186080 | 1008.82 |