Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00353 ATGAGCATCGTGGATGATCACATTGCTCCCTCAAGGTATGAGGGTTTTAATCATGACGACTTGTCCAATCTGGAGGACGGCTCCGATCGTACGGACTTCTCCTTCGCTGACTACAATGAACCTCTGGAGGACGATGACGACGTAACGCCGGCTCAACTCTATATGGCTAGCAAGCTTGTCTCTCCTGCTTCAACCCCGCTGATTGAACTTCCTCAGATGCTTTGGCTGCTCTCTTCAATATTAAAAATAACGGTATTAACTGTTTGTCAAAGCTCTAGCAAGGGTTCAATAGATGGAGCATCTTCCTGTGGAGAGGCGAAGTCATCTGCGGAAATTCGAGCAGAGAATGTCAGGTTCAATCTTGAGCCAGGATACCCCAGTTTTGTGAAGTCCTTGGTCAGGTCACATGTTGCTAGTTGTTTCTGGATGGGGCTTCCTGGATTGTTCTGCAAGAGACATTTACCAAACAAAGATGTGACAATGATATTGGAAGATGAAGCTGGTAAAGAATTCAAAGCGAAATACATTGCATACAAGACAGGGTTAAGTTCTGGTTGGAGACATTTTTTTGTTGTTCATAAGCTAATGGAGGGAGATACTTTAGTCTTTCAATTGGTACAGCCTATGAGATTTAAGGTTTACATAGCAAGGGCCAAGTGTTCAACAGAAATGTATGGAGCTCATCCGCGCCTCAATCTTGATTTAGAGGCTCCGTCGAAACAAAATATGAGAGGTAAAAACAATGGTTTGGGAATTTTTGCTTATGATACTTCGAAGAGGAAACGTCATAAATCGTTTCCTGATGTTGCTCAGAAAAAGAATATGACTCTTGCACCAAATCTGACTCCCACAGTTAAACAATCAGTAGAAGAATCTGAATATGACAGTGAGGAAGCCGGTTCAGAAGTGCTTGATGACTTGAGACCAGATATATCCTTCGTAGACGTGGAAAACTTTGAGAATTTCAGAATTCTGATTAATGGATTATCTGTAGATTCTGAGTTTACTGATGAAATTCGAAGGAAGTACTACGAGCTTTGTTGTAGTCAGCAATCATTTCTTCATGATAATCTTATAAAAGGCATAAATTCTGTGTTCATCGTTGGAGCAATAGCCGAGACCGTCGACATTGCTGATGCTATAAAATCCTGCAACCTAAATATCCCACGGGATGAATTTACTAAAAATGGGACAAAACACTGCTTGCATTTCAGCATCTATAGGCATGGACGTACAGTTTTTACGGCTTCGACTACGCCGGATTGTGAGCCTTGCCTTTGA 1281 0.4184 MSIVDDHIAPSRYEGFNHDDLSNLEDGSDRTDFSFADYNEPLEDDDDVTPAQLYMASKLVSPASTPLIELPQMLWLLSSILKITVLTVCQSSSKGSIDGASSCGEAKSSAEIRAENVRFNLEPGYPSFVKSLVRSHVASCFWMGLPGLFCKRHLPNKDVTMILEDEAGKEFKAKYIAYKTGLSSGWRHFFVVHKLMEGDTLVFQLVQPMRFKVYIARAKCSTEMYGAHPRLNLDLEAPSKQNMRGKNNGLGIFAYDTSKRKRHKSFPDVAQKKNMTLAPNLTPTVKQSVEESEYDSEEAGSEVLDDLRPDISFVDVENFENFRILINGLSVDSEFTDEIRRKYYELCCSQQSFLHDNLIKGINSVFIVGAIAETVDIADAIKSCNLNIPRDEFTKNGTKHCLHFSIYRHGRTVFTASTTPDCEPCL* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00353 426 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 99 219 IPR044837 -
Pte12g00353 426 ProSiteProfiles B3 DNA-binding domain profile. 128 219 IPR003340 GO:0003677
Pte12g00353 426 Pfam B3 DNA binding domain 128 217 IPR003340 GO:0003677
Pte12g00353 426 SUPERFAMILY DNA-binding pseudobarrel domain 121 219 IPR015300 -
Pte12g00353 426 SMART B3_2 128 219 IPR003340 GO:0003677
Pte12g00353 426 Gene3D - 105 220 IPR015300 -
Pte12g00353 426 CDD B3_DNA 126 217 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00353 Pte-Chr12 2914870 2917074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00353 105 223 B3 DNA Binding Superfamily AT5G42700 49.580 1.51e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte12g00353 B3 7.4e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00353 - - palz:118047755 335.88