Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00348 ATGAGCATCGTGGATGATCACATTGCTCCCTCAAGGTATGAGGGTTTTAATCATGACGACTTGTCCAATCTGGAGGACGGCTCCGATCGTACGGACTTCTCCTTCGCTGACTACAATGAACCTCTGGAGGACGATGACGACGTAACGCCGGCTCAACTCTATATGGCTAGCAAGCTTGTCTCTCCTGCTTCAACCCCGCTCTCTTCAATATTAAAAATAACGGTATTAACTGTTTGTCAAAGCTCTAGCAAGGGTTCAATAGATGGAGCATCTTCCTGTGGAGAGGCGAAGTCATCTGCGGAAATTCGAGCAGAGAATGTCAGGTTCAATCTTGAGCCAGGATACCCCAGTTTTGTGAAGTCCTTGGTCAGGTCACATGTTGCTAGTTGTTTCTGGATGGGGCTTCCTGGATTGTTCTGCAAGAGACATTTACCAAACAAAGATGTAACAATGATATTGGAAGATGAAGCTGGTAAAGAATTCAAAGCGAAATACATTGCATACAAGACAGGGTTAAGTTCTGGTTGGAGACATTTTTTTGTTGTTCATAAATGGAGGGAGATACTTTAG 570 0.4421 MSIVDDHIAPSRYEGFNHDDLSNLEDGSDRTDFSFADYNEPLEDDDDVTPAQLYMASKLVSPASTPLSSILKITVLTVCQSSSKGSIDGASSCGEAKSSAEIRAENVRFNLEPGYPSFVKSLVRSHVASCFWMGLPGLFCKRHLPNKDVTMILEDEAGKEFKAKYIAYKTGLSSGWRHFFVVHKWREIL* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00348 189 SUPERFAMILY DNA-binding pseudobarrel domain 113 183 IPR015300 -
Pte12g00348 189 Pfam B3 DNA binding domain 118 183 IPR003340 GO:0003677
Pte12g00348 189 Gene3D - 95 187 IPR015300 -
Pte12g00348 189 CDD B3_DNA 116 184 IPR003340 GO:0003677
Pte12g00348 189 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 89 184 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00348 Pte-Chr12 2881924 2883217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00348 103 184 B3 DNA Binding Superfamily AT3G19184 50.000 5.31e-24 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pte12g00348 B3 4.4e-09 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00348 - - qsa:O6P43_024643 162.155