Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00343 ATGGATGCAGACACTGTGAAGACTTCTGCAGGAGATAAAGGCATGGACATGATGGCAATGATGATGCAAATGGAAAAGTTACCTGAGTTCTGTGACTCATTTTATAATACCACATCATACCCAGACATAGAATTCTCTGGTGGAAACTACTCTACCGGCATTGCTTGTGCTACACAACCAATATTACCCTCACAATGTATTGTTCCACCTGCGGCTTTGATGGCAAACCCTCGTTCCACTACTACATTCATGAGCAATCCAATTCAAGAGCCAGTGACGCCTCCACTTCAGTCTAATGCACTCTCAGGAACACTCAAGAGTTCCAACACTGCATATCCCTACCCTGTTACTTCGGATAAAAAAAACTCCATGGTAGCAATGAGAGAGATGATATTCCGAATGGCGGTGATGCAACCAATTCATATTGACCCTGAATCCATAAAGCCACCTAAGAGAAGGAACGTGAAGATTTCAAAGGACCCGCAAAGCGTGGCTGCTAGACACAGGAGAGAAAGGATAAGCGAGAGGATAAGGATTTTGCAGAGACTTGTTCCAGGTGGTACGAAAATGGACACTGCTTCTATGTTGGATGAAGCTATACATTACGTTAAGTTCTTGAAGAAACAAGTGCAGACTCTTGAACAAACCGGAGCTCATCACAGACCCATGGGTGTACTTCTGCCTGGGATAACGAATACCAATTTGAATCACTCAGTATTGTTCAGAGGTGGCCAGCCTTCCCAAGGAGTGGATCCAATGCACATGCTGAGGTGA 774 0.4457 MDADTVKTSAGDKGMDMMAMMMQMEKLPEFCDSFYNTTSYPDIEFSGGNYSTGIACATQPILPSQCIVPPAALMANPRSTTTFMSNPIQEPVTPPLQSNALSGTLKSSNTAYPYPVTSDKKNSMVAMREMIFRMAVMQPIHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQTGAHHRPMGVLLPGITNTNLNHSVLFRGGQPSQGVDPMHMLR* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00343 257 CDD bHLH_AtIND_like 158 214 - -
Pte12g00343 257 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 224 IPR036638 GO:0046983
Pte12g00343 257 SMART finulus 163 212 IPR011598 GO:0046983
Pte12g00343 257 Coils Coil 196 216 - -
Pte12g00343 257 Gene3D - 156 223 IPR036638 GO:0046983
Pte12g00343 257 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 157 206 IPR011598 GO:0046983
Pte12g00343 257 FunFam BHLH transcription factor 160 223 - -
Pte12g00343 257 Pfam Helix-loop-helix DNA-binding domain 167 206 IPR011598 GO:0046983
Pte12g00343 257 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 13 224 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00343 Pte-Chr12 2833110 2833883 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00343 24 215 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G67060 54.106 1.86e-50 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte12g00343 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00343 - - qsa:O6P43_033826 259.61