Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00335 ATGTGGGATCTTAATGACTCTCCTGATCAGAGAAGACTGGATGATGAATCAGAAGAAGGATGTTCATCTCCTAAGACATCTATCGATGGAGATGATGATAAAGGCAAACGGATTGGATCCGTTTCTAATTCCAGTTCATCTGCTGTGGTGATAGAGGAAGGATCAGAAGAAGAAGAAGAACAAGAAGAAGAAGCTGAACGGAGCAGGACTTTCAGGAAGCGAAGCAGTAAGATATTCGGCTTTTCTATGAACCAGGATCAGTCGTCCGTGGACGGTGGTCAACCAGTGACTCGCCAGTTTTTTCCGGTGGACGAATCTGAGATGGCTATTTCGTCCAGTGGAGGAGAGGTTGGTGGTGGTGCTGACGGTGGCCACAGCTCCTCCTTCCCCCGTGCTCACTGGGTTGGTGTCAAGTTCTGTCAATCGGACTCGCTTGTTATCGGAAAACCATTAGAGCCATCACAGCCTGTGAAGAAGAGTCGCAGAGGGCCAAGGTCACGGAGCTCTCAGTACAGAGGTGTTACCTTTTACAGAAGAACTGGTCGATGGGAGTCTCACATATGGAAAGACGCTCAAAATTGGAAATGGTTAAGTGGACATAATAATTATATCTACGCATCTTTCTGCAGTGCTTATGATCGAGCTGCTATTAAGTTCAGAGGTGTAGACGCTGACATAAACTTCAACATTGAAGATTACGAGGAAGACTTGAAGCAGATGAGCAATCTCACCAAGGAAGAATTTGTCCATGTACTTCGTCGACAAAGCACCGGATTTCCTAGAGGTAGCTCCAAATATAGAGGTGTAACCTTGCATAAATGTGGCAGATGGGAAGCTCGAATGGGCCAATTTCTGGGCAAAAAATACGTTTACTTGGGCTTATTTGATACGGAGATAGAAGCTGCAAGGGCTTATGACAAGGCAGCAATTAAGTGCAATGGTAAAGAGGCTGTTACCAACTTTGATCCAAGTATCTATAGTAATGAACTGAACTTTGAAGCGTCTGGTGAAGCTGCCGAACACAATCTCGATCTGAGTTTGGGTTCTTCAAGCTCCAAGCACTCAAGCTCGGTGATTGATCAGCATTCTAAACCTTTGGCGTCCGAGTCTGATTGGAGGCACAGCACTTCTAGGCCTAATAAGGAGCAAATGTACAGAAGTGACAACCTTGAAGTAAGAGATGGATACAATGAGACTGAAACCCGGCAGCGTCTGAGTCAAACACACCTTCAGTCATCAGCACCTAGTGATTTACACAGATATGGACGGTATATAAGGTCTGGAGAACAACCACAGATGGTTCCCAATTTGCCACCCAGTCATCATCCTCATAGTTATCTTTTCTCGAGCGGCAGCAATGGAGGACGGATTGGAAATGATCACCTTGGACTGTCAATGACAGATCAACAGTGGCAATCCCGACCTCCTCCTCTTGTTTTTGCAACTGCTGCAGCATCATCAGGATTCTCACAGCATGTTCAGAAAAATGGATTCCATTCTCTGATGAGACCCACTTAA 1518 0.4559 MWDLNDSPDQRRLDDESEEGCSSPKTSIDGDDDKGKRIGSVSNSSSSAVVIEEGSEEEEEQEEEAERSRTFRKRSSKIFGFSMNQDQSSVDGGQPVTRQFFPVDESEMAISSSGGEVGGGADGGHSSSFPRAHWVGVKFCQSDSLVIGKPLEPSQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWKDAQNWKWLSGHNNYIYASFCSAYDRAAIKFRGVDADINFNIEDYEEDLKQMSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYSNELNFEASGEAAEHNLDLSLGSSSSKHSSSVIDQHSKPLASESDWRHSTSRPNKEQMYRSDNLEVRDGYNETETRQRLSQTHLQSSAPSDLHRYGRYIRSGEQPQMVPNLPPSHHPHSYLFSSGSNGGRIGNDHLGLSMTDQQWQSRPPPLVFATAAASSGFSQHVQKNGFHSLMRPT* 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00335 505 SMART rav1_2 170 235 IPR001471 GO:0003700|GO:0006355
Pte12g00335 505 SMART rav1_2 265 328 IPR001471 GO:0003700|GO:0006355
Pte12g00335 505 FunFam AP2-like ethylene-responsive transcription factor 264 324 - -
Pte12g00335 505 MobiDBLite consensus disorder prediction 346 364 - -
Pte12g00335 505 MobiDBLite consensus disorder prediction 150 171 - -
Pte12g00335 505 Gene3D AP2/ERF domain 264 323 IPR036955 GO:0003700|GO:0006355
Pte12g00335 505 Gene3D AP2/ERF domain 169 231 IPR036955 GO:0003700|GO:0006355
Pte12g00335 505 ProSiteProfiles AP2/ERF domain profile. 170 229 IPR001471 GO:0003700|GO:0006355
Pte12g00335 505 MobiDBLite consensus disorder prediction 346 454 - -
Pte12g00335 505 SUPERFAMILY DNA-binding domain 264 324 IPR016177 GO:0003677
Pte12g00335 505 CDD AP2 264 324 IPR001471 GO:0003700|GO:0006355
Pte12g00335 505 SUPERFAMILY DNA-binding domain 169 230 IPR016177 GO:0003677
Pte12g00335 505 MobiDBLite consensus disorder prediction 1 38 - -
Pte12g00335 505 MobiDBLite consensus disorder prediction 401 415 - -
Pte12g00335 505 MobiDBLite consensus disorder prediction 366 400 - -
Pte12g00335 505 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 91 410 - -
Pte12g00335 505 Pfam AP2 domain 264 313 IPR001471 GO:0003700|GO:0006355
Pte12g00335 505 PRINTS Ethylene responsive element binding protein signature 304 324 IPR001471 GO:0003700|GO:0006355
Pte12g00335 505 PRINTS Ethylene responsive element binding protein signature 266 277 IPR001471 GO:0003700|GO:0006355
Pte12g00335 505 ProSiteProfiles AP2/ERF domain profile. 265 322 IPR001471 GO:0003700|GO:0006355
Pte12g00335 505 MobiDBLite consensus disorder prediction 1 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00335 Pte-Chr12 2754928 2757745 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00335 1 356 AP2-EREBP Transcription Factor Family AT4G36920 61.725 5.76e-122 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte12g00335 AP2 3.5e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00335 K09284 - qsa:O6P43_024617 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00335 12 2754928 2757745 Pte12g00335 12 2754928 2757745 RCT