Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00334 ATGCTAGGTAACCCGGAAGGAGGAAGAGGAAGTGGTGGTGGTGGTGGAAGAGAAAGAGAAACAGCTACGAGGAAGAGAGCTCTAGAAGGTGAAAGAAGGTACAAAGGGATAAGGATGAGGAAGTGGGGTAAGTGGGTGGCTGAGATTCGAGAACCCAATAAGCGTTCTAGGATTTGGCTTGGTTCTTATTCAACGCCGGTCGCCGCCGCTCGGGCTTACGACACTGCAGTATTTTACCTCAGGGGACCATCCGCACGCCTTAATTTCCCGGAGCTATTGACCGGTGAAGCTGGCGGCGTTACCGATGGTGACATGTCGGCGGCTACCATTAGAAAGAAAGCTACAGAGGTAGGAGCTAGAGTCGATGCGCTTCAAACATCTTTGCACAGACATCACCATGCATCGTCGGTGTCCGAAAGTAGCCCTCGCGGCATCGGCGGCGGTGGAGATAGAGAATTCGTGGAACGGGTCGATTTGAATAAGGTACCCGAACCCGAAGATTCGGACTGTGAGTGGGAGATTAATTGA 528 0.5227 MLGNPEGGRGSGGGGGRERETATRKRALEGERRYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSTPVAAARAYDTAVFYLRGPSARLNFPELLTGEAGGVTDGDMSAATIRKKATEVGARVDALQTSLHRHHHASSVSESSPRGIGGGGDREFVERVDLNKVPEPEDSDCEWEIN* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00334 175 Gene3D AP2/ERF domain 32 91 IPR036955 GO:0003700|GO:0006355
Pte12g00334 175 Pfam AP2 domain 33 82 IPR001471 GO:0003700|GO:0006355
Pte12g00334 175 MobiDBLite consensus disorder prediction 128 153 - -
Pte12g00334 175 PRINTS Ethylene responsive element binding protein signature 34 45 IPR001471 GO:0003700|GO:0006355
Pte12g00334 175 PRINTS Ethylene responsive element binding protein signature 72 92 IPR001471 GO:0003700|GO:0006355
Pte12g00334 175 SUPERFAMILY DNA-binding domain 33 91 IPR016177 GO:0003677
Pte12g00334 175 FunFam Ethylene-responsive transcription factor 2 32 91 - -
Pte12g00334 175 ProSiteProfiles AP2/ERF domain profile. 33 90 IPR001471 GO:0003700|GO:0006355
Pte12g00334 175 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 21 169 - -
Pte12g00334 175 SMART rav1_2 33 96 IPR001471 GO:0003700|GO:0006355
Pte12g00334 175 MobiDBLite consensus disorder prediction 1 30 - -
Pte12g00334 175 CDD AP2 33 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00334 Pte-Chr12 2740029 2742228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00334 12 173 AP2-EREBP Transcription Factor Family AT5G67190 57.838 1.54e-60 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pte12g00334 AP2 1.2e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00334 K09286 - qsa:O6P43_034519 247.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00334 12 2740029 2742228 Pte12g00334 12 2740029 2742228 RCT