Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00328 ATGGTTTCATTCTCATCTTCTGATAAGAAGATGGCTCTAAGAGACGAAAGCCATGACGTTCAAAACCATCCATTGATTTTTGATGCGCTCCTCTGTGAGGAAGATAGTATTGAGGACGACTTTGGCGAGACTGTTCTTGATGATGCCGAACTTGTGAATGTAGGAAAGGTTTCACCTTCAACTTTAGTGTTGGTAGAAAGTGATTTGTTTTGGGAGGAAGATGAGCTGCTGTCTCTTTTATCCAAAGAAGAACAGACCCATTTTGATTTTGCTCGTATAATGGGTGATCAATCTCTTCTTAGAGCTCATCAGGAAGCTGTTCGCTGGATTTCTAAAGTCAGTTTGCAGTATGGGTTCTCTGTCTTGACCATTGTTCTCGGAGTTAATTACTTCGATAGGTTCAGTACCAGCTTGACTTTCCAGAAGGATAAGCCTTGGATGACTCAACTTGCTGCAGTTGCTTGCCTGTCTTTGGCTGCCAAGGTGGAGGAGACCTATGTGCCACTTCTTTTAGACCTGCAGCAGGTGGAGGAAACAAAATATCTGTTTGAAGCCAAGACCATCCAAAGAATGGAACTTCTGGTGCTGTCCACTCTCAAATGGAGGATGACTCCGGTTACTCCAATTTCTTATTTTGAACACATTGTTAGAAGGCTTGGTTTAAAGAGCCCATTGCATTGGGACTTCCTGCGTCGGTGTGAGCTCCTGCTTCTCTCTGTCATTGCTGATTCAAGGATTATCGGCTTTCTTCCTTCTACATTAGCTGCTGCAACAATGATCAGGGTCATAGAAGAGATCGAACCGTGTGATGCAATGGAATACCACAATCAGCTTCTTAGTGTTATGAAAATAAGTGAGGAAAAGGTGGATGAATGCTACAAGCTCTTACTGAAAGTATTATATTGCCATGGCGACATTCCAATTCCTCACAACAAAAGGAAGCACTTATCTGTACCAAGCAGCCCAGATGGCGTTATTGATGCATCTATCAGCTGTGATAGCTCAAATGATTCGTGGAATGTTTCATCGTCAGTCTCACTTTCTCAGGAGCCACGTTTCAAGAAGAGGAGATCACTGGACCAGCCAATGCGACTACCATCTCTGAGTGCTCTGTCTGTAGATGTGCTTGCAAGCCCCCGTTAA 1143 0.4366 MVSFSSSDKKMALRDESHDVQNHPLIFDALLCEEDSIEDDFGETVLDDAELVNVGKVSPSTLVLVESDLFWEEDELLSLLSKEEQTHFDFARIMGDQSLLRAHQEAVRWISKVSLQYGFSVLTIVLGVNYFDRFSTSLTFQKDKPWMTQLAAVACLSLAAKVEETYVPLLLDLQQVEETKYLFEAKTIQRMELLVLSTLKWRMTPVTPISYFEHIVRRLGLKSPLHWDFLRRCELLLLSVIADSRIIGFLPSTLAAATMIRVIEEIEPCDAMEYHNQLLSVMKISEEKVDECYKLLLKVLYCHGDIPIPHNKRKHLSVPSSPDGVIDASISCDSSNDSWNVSSSVSLSQEPRFKKRRSLDQPMRLPSLSALSVDVLASPR* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00328 380 SUPERFAMILY Cyclin-like 188 302 IPR036915 -
Pte12g00328 380 PANTHER CYCLINS 75 299 IPR039361 -
Pte12g00328 380 MobiDBLite consensus disorder prediction 334 349 - -
Pte12g00328 380 FunFam D6-type cyclin 87 204 - -
Pte12g00328 380 CDD CYCLIN_AtCycD-like_rpt1 104 201 - -
Pte12g00328 380 Gene3D - 100 204 - -
Pte12g00328 380 FunFam CYCLIN D32 205 294 - -
Pte12g00328 380 SUPERFAMILY Cyclin-like 70 203 IPR036915 -
Pte12g00328 380 SMART Cyclin_C_2 206 333 IPR004367 -
Pte12g00328 380 CDD CYCLIN_AtCycD-like_rpt2 206 296 - -
Pte12g00328 380 Gene3D - 205 294 - -
Pte12g00328 380 SMART cyclin_7 108 197 IPR013763 -
Pte12g00328 380 Pfam Cyclin, C-terminal domain 206 302 IPR004367 -
Pte12g00328 380 MobiDBLite consensus disorder prediction 334 360 - -
Pte12g00328 380 Pfam Cyclin, N-terminal domain 81 203 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00328 Pte-Chr12 2687375 2690422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00328 11 369 Core Cell Cycle Gene Families AT5G67260 50.943 7.36e-106 315
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00328 K14505 - qsa:O6P43_024601 414.075
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00994 14 31551578 31554797 Pte12g00328 12 2687375 2690422 RCT
Pte1g02523 1 45657263 45658799 Pte12g00328 12 2687375 2690422 RCT
Pte2g00372 2 2874872 2876338 Pte12g00328 12 2687375 2690422 RCT
Pte12g00328 12 2687375 2690422 Pte12g00328 12 2687375 2690422 RCT