Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00323 ATGGAGAGCAAGCATGTTACCAGAAAAGGAGTGGATCGGATTAAGGGTCCATGGAGCCCCGAGGAAGATGAGGCTCTTCAAAAGCTTGTAGAGAAACATGGAGCCAGAAACTGGTCTTTGATCAGTAAATCTATTCCAGGTCGATCTGGAAAGTCGTGTCGGCTACGATGGTGTAATCAGCTGTCTCCTCAGGTGGAGCACCGAGCTTTCACGCCTGAAGAGGATGATGCTATCATCAGGGCTCATGCCCGATTCGGCAATAAGTGGGCTACAATCGCCAGGCTTTTATCGGGTCGGACTGATAACGCCATCAAAAACCACTGGAACTCTACCTTGAAGCGCAAGTGCTCGGCGATGATGATGGAGGAAGGTGGGGCTCTTTGTGATATTGATGGAAACTTGAATCAGCAGCCACTGAAGAGATCGGCGAGCACTGGTTCTGCCATGCCTGTGCCTACTGCTCTTTACATGAACCCACCAACACCAAGTAGTCCATCTGGTTCCGATGTCAGCGATTCTAGTGCACAAGTTGCATCACCTTCCCACATATACCGTCCTGTTCCCAAAACTGGTGGTGTTTTTCCTCCTGCAGAAATGACTTCATCTTCTGTAGACCCTCCAACGTCATTGTCTCTATCGTTACCGGGTGTTGATTCTGGAGAACTGTCAAACCGGGTGTCTGAGCGAGCCCAGTCCCTTCAAGCACCGAACCCCATATCTTTTCTTCCGGAGACAACCTCGTCGCCTTCAATGGTCCCGTTACAGCAGAAGTTTCGGCAGGTGCAGTTGGGTCAAGATGAAGGTTCCGGCGACTGGAATATGCCGGCAGTAGTGAGAACAAATCAGAAGATTGCCGGGCCGTTTAATTTCAGTGCCGAATTGATGGTTGTGATGCAAGAGATGATAAAGAAGGAAGTGCGGAACTACATGGTGGGGTTGGAGCAAAATGGTAATGAGAATAGCCCTGGGGATGGGATGTGTATACAGCAAGTAGTCAATGGGTTTAGGAATAATGTCTCAGTGAACCGAGTTGGGGTTATCAGGATAGACAATTGA 1056 0.4924 MESKHVTRKGVDRIKGPWSPEEDEALQKLVEKHGARNWSLISKSIPGRSGKSCRLRWCNQLSPQVEHRAFTPEEDDAIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCSAMMMEEGGALCDIDGNLNQQPLKRSASTGSAMPVPTALYMNPPTPSSPSGSDVSDSSAQVASPSHIYRPVPKTGGVFPPAEMTSSSVDPPTSLSLSLPGVDSGELSNRVSERAQSLQAPNPISFLPETTSSPSMVPLQQKFRQVQLGQDEGSGDWNMPAVVRTNQKIAGPFNFSAELMVVMQEMIKKEVRNYMVGLEQNGNENSPGDGMCIQQVVNGFRNNVSVNRVGVIRIDN* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00323 351 MobiDBLite consensus disorder prediction 160 180 - -
Pte12g00323 351 CDD SANT 69 112 IPR001005 -
Pte12g00323 351 FunFam Transcription factor MYB44 69 115 - -
Pte12g00323 351 Pfam Myb-like DNA-binding domain 15 61 IPR001005 -
Pte12g00323 351 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pte12g00323 351 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Pte12g00323 351 Gene3D - 68 126 - -
Pte12g00323 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 65 IPR017930 -
Pte12g00323 351 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Pte12g00323 351 Gene3D - 14 66 - -
Pte12g00323 351 CDD SANT 17 59 IPR001005 -
Pte12g00323 351 FunFam MYB transcription factor 15 66 - -
Pte12g00323 351 SMART sant 14 63 IPR001005 -
Pte12g00323 351 SMART sant 66 114 IPR001005 -
Pte12g00323 351 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 116 IPR017930 -
Pte12g00323 351 ProSiteProfiles Myb-like domain profile. 10 61 IPR001005 -
Pte12g00323 351 PANTHER MYB PROTEIN-RELATED 15 180 - -
Pte12g00323 351 MobiDBLite consensus disorder prediction 138 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00323 Pte-Chr12 2651434 2653326 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00323 7 350 MYB Transcription Factor Family AT4G37260 49.722 1.64e-96 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte12g00323 Myb_DNA-binding 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00323 K09422 - qsa:O6P43_024595 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte14g00998 14 31572731 31573901 Pte12g00323 12 2651434 2653326 RCT
Pte2g01146 2 12506157 12507101 Pte12g00323 12 2651434 2653326 RCT
Pte12g00323 12 2651434 2653326 Pte12g00323 12 2651434 2653326 RCT