Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00318 ATGGCTCTTCAACGAGAGAGCAAAGAGCCACTGCTGGAAAAGTCGCTGCAAGAGCAGCAAGAAAGAGCCTATGATTCCTTTTCCAAGGTCCATGTCATTGGAATAGATGAAGTCGACGACGACAGCGACGGGTTGGCTCAAGCGTCACCCTTTTCATGGAGGAAGCTTTGGCTCTTCACTGGACCTGGTTTTTTGATGAGCATCGCATTCCTTGATCCTGGGAACCTTGAGGGCGATCTTCAGGCTGGTGCGATTGCTGGGTATTCGCTGCTGTGGCTGCTCATGTGGGCTACTTTCATGGGGCTTATTATCCAGCTTTTGTCTGCTCGACTTGGTGTAGCTACTGGTAGGCACTTGGCCGAGCTGTGCAGGGAGGAGTACCCCACATGGGCGAGAATGGTATTGTGGATAATGGCGGAGTTGGCTTTAATTGGTGCAGACATCCAAGAGGTCATTGGAAGTGCCATTGCTATCAAGATTTTGAGTAATGGCGTTTTGCCACTTTGGGCTGGAGTTACAATCACAGCTTGTGACTGTTTTATCTTCCTGTTTCTTGAGAACTTTGGCGTGAGGAAATTGGAAGCCTTCTTTGCCATTCTAATCGCAGTGATGGCGCTGTCATTTGCGTGGATGTTTGGTGAAGCAAAGCCTAGTGGCATGGAGCTCCTTCTTGGTATTTTGGTTCCAAAGCTTAGCTCCAAAACTATAAGGCAGGCTGTTGGAGTTGTGGGTTGCCTTATTATGCCGCATAATGTGTTTTTGCATTCTGCCCTTGTGCAATCCAGAGATATTGATCGCAGCAAGAAAGGCAGAGTTCAAGAAGCTCTAAATTATTATTCCATAGAGTCATCCCTTGCTCTGTTTCTCTCCTTCATCATTAATATATTTGTCACTACTGTTTTCGCCAAGGGATTTTATGGTACTGATTTAGCAGATGGCATAGGACTTGTTAATGCAGGACAACATCTTCAAGAGAAGTATGGAGGTGGACTTTTCCCAATTTTATATATATGGGCTATTGGTTTATTAGCAGCTGGCCAAAGTAGCACTATCACTGGCACTTATGCTGGGCAATTCATCATGGGAGGCTTCCTTGACATGAGGTTGAAGAAATGGCTGAGGGCATTAATAACACGAAGTTGTGCGATTATACCAACTATTGTAGTTGCTCTTTTCTTCGACACCTCGGATGCAGCATTCGATGTCCTTAACGAATGGCTTAATGTGCTTCTGTCAATCCAGATACCCTTTGCTTTAATTCCATTGCTTTCTTTGGTGGCTCAGGAGCAGCTAATGGGCACCTTCAAAATCGGCTCCATGCTAAAGGTAGTTTCATGGACTGTTGCTAGCCTGGTCATCATAATCAATGGCTACCTGTTAGTGGATTTCTTCACCAAGGAAGTGAATGGTGTAGTGTTTAGCACAGTTGTGTGTGTGTTTACAGTGGCTTATGTTTCATTTGTAGTTTACCTTGTTTTACGTTCCATTACCTTTCCATACCTTCGAACATCGAATCAAATGTAA 1524 0.4482 MALQRESKEPLLEKSLQEQQERAYDSFSKVHVIGIDEVDDDSDGLAQASPFSWRKLWLFTGPGFLMSIAFLDPGNLEGDLQAGAIAGYSLLWLLMWATFMGLIIQLLSARLGVATGRHLAELCREEYPTWARMVLWIMAELALIGADIQEVIGSAIAIKILSNGVLPLWAGVTITACDCFIFLFLENFGVRKLEAFFAILIAVMALSFAWMFGEAKPSGMELLLGILVPKLSSKTIRQAVGVVGCLIMPHNVFLHSALVQSRDIDRSKKGRVQEALNYYSIESSLALFLSFIINIFVTTVFAKGFYGTDLADGIGLVNAGQHLQEKYGGGLFPILYIWAIGLLAAGQSSTITGTYAGQFIMGGFLDMRLKKWLRALITRSCAIIPTIVVALFFDTSDAAFDVLNEWLNVLLSIQIPFALIPLLSLVAQEQLMGTFKIGSMLKVVSWTVASLVIIINGYLLVDFFTKEVNGVVFSTVVCVFTVAYVSFVVYLVLRSITFPYLRTSNQM* 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00318 507 Hamap Divalent metal cation transporter MntH [mntH]. 38 464 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pte12g00318 507 PRINTS Natural resistance-associated macrophage protein signature 374 391 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pte12g00318 507 PRINTS Natural resistance-associated macrophage protein signature 239 262 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pte12g00318 507 PRINTS Natural resistance-associated macrophage protein signature 408 427 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pte12g00318 507 PRINTS Natural resistance-associated macrophage protein signature 190 211 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pte12g00318 507 PRINTS Natural resistance-associated macrophage protein signature 135 161 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pte12g00318 507 PRINTS Natural resistance-associated macrophage protein signature 346 365 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pte12g00318 507 PRINTS Natural resistance-associated macrophage protein signature 165 184 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pte12g00318 507 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 54 432 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pte12g00318 507 Pfam Natural resistance-associated macrophage protein 77 438 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pte12g00318 507 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 37 493 IPR001046 GO:0016020|GO:0030001|GO:0046873
Pte12g00318 507 NCBIfam Nramp family divalent metal transporter 61 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00318 Pte-Chr12 2580052 2583208 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00318 4 498 Inorganic Solute Cotransporters AT2G23150 76.258 0.0 776
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00318 K21398 - rcu:8285616 808.905
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00318 12 2580052 2583208 Pte12g00318 12 2580052 2583208 RCT