Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00317 ATGAAGACCAGCTCTAGGAATCAAACAATTTGGAGTGGACTTTCTGAAGGATTTATGGCTAGGGTGATTTCTTCTCCTCCCACGGAAAACCGAAATGATATTTCTAGCACTGAAACTGAAGTTAGAAAGCTGGTTGAGGAGTTGAAAAGCTCTTCCCTTGATAACAGAAGAGAAGCAACTTTACAATTGCGACTACTTGCTAAGCATAACATGGATAATCGTATTTTGATTGCAAACTGTGGGGCAATTAGTTTGCTTGTTAACTTACTCCACTCTACTGACACAGTGATTCAAGAGAATGCTGTCACAGCGCTGCTGAACCTGTCAATCCATGATAACAACAAAAATCTCATAGCTAATGCTGATGCACTTGATCCATTGATTCATGTCCTTGAGACTGGTAGTGCAGATGCCAAGGCAAACTCAGCTGCTACTCTTTTTAGCTTGTCAGTTATTGAGGACAACAAGATCAAGATTGGAAGGTCGGGGGCAATTAGACCACTAGTTAATCTCTTGGGTAATGGTACTCCTAGGGGGAAGAAAGATGCAGCTACAGCTTTGTTTAATTTGTCCTTATCTCATGAAAACAAAGGCCGGATTGTTCAAGCTGGTGCTGTGAAGCATCTTGTGGATTTATTGGACCCAGAAGCTGGGATGGTTGACAAGGCTGTTGCAGTTTTGGCAAACTTGGCCACAATCCCTGAGGGAAGGACTGCAATTGGTCAGGAAAAAGGCATTCCTGCTTTGGTTGCAATTGTTGAGATTGGTTCTGCCAGAGGAAAGGAGAATTCTGCAGCTGCCCTCTTACAACTTTGCCAAAATAGTGTCAGATTTTGCATTAAGGTACTTGAAGAAGGAGCTGTGCCACCGTTGGTGGCTTTATCACAGACAGGCACTCCAAGGGCCAAAGAAAAGGCTCAAGCACTACTTAACTACTTTAGAAATCAAAGGCATAGTAGTACAGGAAGGGGCTGA 975 0.4318 MKTSSRNQTIWSGLSEGFMARVISSPPTENRNDISSTETEVRKLVEELKSSSLDNRREATLQLRLLAKHNMDNRILIANCGAISLLVNLLHSTDTVIQENAVTALLNLSIHDNNKNLIANADALDPLIHVLETGSADAKANSAATLFSLSVIEDNKIKIGRSGAIRPLVNLLGNGTPRGKKDAATALFNLSLSHENKGRIVQAGAVKHLVDLLDPEAGMVDKAVAVLANLATIPEGRTAIGQEKGIPALVAIVEIGSARGKENSAAALLQLCQNSVRFCIKVLEEGAVPPLVALSQTGTPRAKEKAQALLNYFRNQRHSSTGRG* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00317 324 Gene3D - 113 218 IPR011989 -
Pte12g00317 324 PANTHER U BOX DOMAIN-CONTAINING 30 313 - -
Pte12g00317 324 Gene3D - 20 112 IPR011989 -
Pte12g00317 324 Gene3D - 219 321 IPR011989 -
Pte12g00317 324 Pfam Armadillo/beta-catenin-like repeat 154 191 IPR000225 GO:0005515
Pte12g00317 324 Pfam Armadillo/beta-catenin-like repeat 72 109 IPR000225 GO:0005515
Pte12g00317 324 Pfam Armadillo/beta-catenin-like repeat 194 231 IPR000225 GO:0005515
Pte12g00317 324 SUPERFAMILY ARM repeat 40 313 IPR016024 -
Pte12g00317 324 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 204 245 IPR000225 GO:0005515
Pte12g00317 324 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Pte12g00317 324 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 163 205 IPR000225 GO:0005515
Pte12g00317 324 SMART arm_5 111 151 IPR000225 GO:0005515
Pte12g00317 324 SMART arm_5 152 192 IPR000225 GO:0005515
Pte12g00317 324 SMART arm_5 233 273 IPR000225 GO:0005515
Pte12g00317 324 SMART arm_5 70 110 IPR000225 GO:0005515
Pte12g00317 324 SMART arm_5 193 232 IPR000225 GO:0005515
Pte12g00317 324 FunFam RING-type E3 ubiquitin transferase 25 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00317 Pte-Chr12 2568985 2571517 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00317 1 325 U-box Gene Family AT2G23140 73.846 2.59e-167 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00317 - - tcc:18611233 498.434