Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00316 ATGCCAAGAATGGTTTCTTCTCCTGCCACTGAAACAAGACCTGATCTTTCCGGCTTTGAAAACCAAGTCCGGAAGCTGGTTGATGAATTGAAGAGCTCTTCCCTTGACACCCAAAGAGAAGCAACAGCGCAACTGCGTTTGCTCGCTAAGAAAAGCATGGATAACCGTATCGTGATTGCAAACTGCGGGGCAATCCGTTTGCTAATTAACATGCTATGCTCAACCGACGCAGGGATTCAAGAGAACTCTGTTACTACCCTACTTAACCTGTCAATCAATGATAACAACAAAAGTCTCATAGCTAATGAAGATGCAATTGATCCTTTGATTTATGTCCTTGAGACCGGTAGCCCAGAGGCAAAGGAAAACTCAGCTGCCACTCTGTTCAGCCTATCAGTCATCGAGGAAAACAAGAATAAGATTGGAAGATCGGGGGCAATTAGACCACTAGTTGATCTCTTGGGTAATGGTCCTCCCAGAGGGAAGAAAGATGCAGCCTCAGCGTTGTTTAGTTTGTCCTTATCTCATGAAAACAGATCCCGGATTGTTCAAGCTGGTGCTGTGAAGCATCTAGTGAATTTAATGGACCCAGCAGCTGGGATGGTTGACAAGGCAGTTGCAGTATTGTCAAATTTGACAACCATCCCCGAGGGGAGGACATCAATTGATCAGGAAAATGGCATTCCTCTTTTGGTTGAGGTTGTTGAGTTGGGTTCCGCCAGAGTAAAGGAGAACGCTGTAGCTGCCCTTTTAAATCTCTGCCGAGATAGTGGCAGATATTGCAGTCAGGTGCTTCAAGAAGGAGTTTTGCCCCCACTGCTGGCGTTATCACAGACAGGCACTCCAAGGGCTAAGGAAAAGGCTCAGGTACTACTCGGCTATTTCAGAAAATAA 894 0.4597 MPRMVSSPATETRPDLSGFENQVRKLVDELKSSSLDTQREATAQLRLLAKKSMDNRIVIANCGAIRLLINMLCSTDAGIQENSVTTLLNLSINDNNKSLIANEDAIDPLIYVLETGSPEAKENSAATLFSLSVIEENKNKIGRSGAIRPLVDLLGNGPPRGKKDAASALFSLSLSHENRSRIVQAGAVKHLVNLMDPAAGMVDKAVAVLSNLTTIPEGRTSIDQENGIPLLVEVVELGSARVKENAVAALLNLCRDSGRYCSQVLQEGVLPPLLALSQTGTPRAKEKAQVLLGYFRK* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00316 297 SMART arm_5 215 255 IPR000225 GO:0005515
Pte12g00316 297 SMART arm_5 134 174 IPR000225 GO:0005515
Pte12g00316 297 SMART arm_5 175 214 IPR000225 GO:0005515
Pte12g00316 297 SMART arm_5 52 92 IPR000225 GO:0005515
Pte12g00316 297 SMART arm_5 93 133 IPR000225 GO:0005515
Pte12g00316 297 SMART arm_5 256 297 IPR000225 GO:0005515
Pte12g00316 297 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 186 227 IPR000225 GO:0005515
Pte12g00316 297 PANTHER U BOX DOMAIN-CONTAINING 21 293 - -
Pte12g00316 297 Gene3D - 8 294 IPR011989 -
Pte12g00316 297 SUPERFAMILY ARM repeat 22 295 IPR016024 -
Pte12g00316 297 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 145 187 IPR000225 GO:0005515
Pte12g00316 297 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 63 105 IPR000225 GO:0005515
Pte12g00316 297 Pfam Armadillo/beta-catenin-like repeat 136 173 IPR000225 GO:0005515
Pte12g00316 297 Pfam Armadillo/beta-catenin-like repeat 176 213 IPR000225 GO:0005515
Pte12g00316 297 Pfam Armadillo/beta-catenin-like repeat 54 91 IPR000225 GO:0005515
Pte12g00316 297 FunFam RING-type E3 ubiquitin transferase 6 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00316 Pte-Chr12 2563036 2565797 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00316 3 296 U-box Gene Family AT2G23140 74.830 4.46e-152 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00316 - - qsa:O6P43_024581 446.817