Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00310 ATGTCCAAAGCACGGGTTTACGCAGACGTTAACGTGGTTCGTCCGAAAGAATACTGGGATTATGAGTCTCTCACTGTTCAATGGGGTGATCAAGATGACTATGAGGTTGTACGGAAAATGGGAAGAGGAAAATACAGTGAAGTTTTTGAAGGAATTAATGTCAACACGAATGACAGGTGCACAATCAAGATACTGAAGCCTGTCAAGAAGAAGAAGATAAAGAGGGAGATAAAAATACTTCAGAACCTTTGTGGTGGCCCAAACATTGTGAAGCTTCTTGACATTGTCCGAGATCAGCACTCAAAAACTCCAAGTTTGGTATTTGAGTATGTGAATAATACAGATTTCAAAGTCTTGTATCCTACTTTGACCGATTATGACATTCGCTACTACATATATGAGCTTCTAAAGGCATTGGATTACTGTCACTCCCAAGGAATCATGCATAGAGATGTGAAGCCCCACAATGTTATGATAGACCATGAATTGCGAAAACTGCGCCTCATAGATTGGGGTCTAGCTGAATTCTACCATCCTGGAAAGGAGTATAACGTCCGTGTGGCTTCAAGATACTTCAAGGGGCCTGAACTTCTGGTTGATTTGCAAGATTATGATTACTCTTTGGATATGTGGAGTCTTGGTTGTATGTTTGCTGGGATGATATTTCGCAAGGAGCCATTCTTTTATGGTCATGACAACCACGATCAGCTGGTCAAAATAGCCAAGGTGCTTGGAACCGATGAGTTGAATGCTTACCTGAATAAATACCAGTTGGAGCTTGACCCTCAACTTGATGCACTTGTGGGAAGGCACAGTAGAAAACCCTGGTCCAAGTTCATTAATGCTGATAATCAGCACCTGGTGTCCCCTGAGGCACTCGATTTTCTTGATAAGCTCCTACGTTATGATCACCAGGACAGGTTGACTGCAAAGGAAGCAATGGCTCATCCCTATTTCTCCCAAGTGAGAGCAGCTGAAAGTAGTAGGATGAGAACACAATAG 1002 0.4251 MSKARVYADVNVVRPKEYWDYESLTVQWGDQDDYEVVRKMGRGKYSEVFEGINVNTNDRCTIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLVFEYVNNTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYQLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEALDFLDKLLRYDHQDRLTAKEAMAHPYFSQVRAAESSRMRTQ* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00310 333 SUPERFAMILY Protein kinase-like (PK-like) 10 323 IPR011009 -
Pte12g00310 333 Gene3D Transferase(Phosphotransferase) domain 1 111 319 - -
Pte12g00310 333 SMART serkin_6 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00310 333 ProSiteProfiles Protein kinase domain profile. 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00310 333 CDD STKc_CK2_alpha 15 319 IPR045216 GO:0004674|GO:0006468
Pte12g00310 333 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
Pte12g00310 333 Gene3D Phosphorylase Kinase; domain 1 34 110 - -
Pte12g00310 333 Pfam Protein kinase domain 34 319 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00310 333 PANTHER CASEIN KINASE II SUBUNIT ALPHA 1 329 IPR045216 GO:0004674|GO:0006468
Pte12g00310 333 FunFam Casein kinase II subunit alpha 20 110 - -
Pte12g00310 333 FunFam Casein kinase II subunit alpha 111 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00310 Pte-Chr12 2516535 2520956 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00310 32 319 Core Cell Cycle Gene Families AT1G76540 29.773 4.01e-43 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Pte12g00310 Pkinase 8.4e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00310 K03097 - qsa:O6P43_033892 659.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00310 12 2516535 2520956 Pte12g00310 12 2516535 2520956 RCT