Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00305 ATGGCCATAAGGCCTTTGCAATTCACCGTCTACCGGCGTAGATTGATTTCTCAGCTCCTCACCAACGAAACTTATCTCTTCGCTTTCTCTTCCTTTTCTTCTTCAGCTTCTTCTTTCTCTTACAGTCCTCAGCTCTCTATTCTTCCATTCCCCTCTCCTTCCATCTCATCCATTTTTATCCTCCGCCACATCGCTTCGTCCGCCGCCGCATCTTCCTCAAATCTCAATCGCCACCGCCATCCTCAACTAACCCCTCACAGCCACCGCCTGCGGTCGTTTTCGCCGCTCGAAACCCTGGCGCAGAAGATTGGAAAATCTATTCGCCGTCCTGGCGCTGCCTCCAAGGCTAGGGTTTATTCCGATGTCAACGTTATCCGGCCAAAAGAATATTGGGACTACGAGTCTCTCACCATCCAGTGGGGAGAGCAGGATGATTACGAGGTGGTGAGGAAGGTTGGAAGAGGGAAATACAGTGAGGTGTTTGAAGGTGTTCATTGCACGGACAATGAGAAATGTATTATCAAAATCTTAAAACCCGTGAAGAAGAAGAAGATTAAGAGGGAGATCAAAATATTGCAGAATCTTTGTGGAGGACCCAACATTGTGAAGTTGTTAGACATCGTTAGAGACCAGCAATCGAAGACTCCAAGCCTTATATTTGAATGTGTGAATAACACAGACTTTAAAGTGTTGTATCCAACACTTTCAGACTATGATATACGATACTACATATATGAGCTTCTAAAGGCATTAGATTATTGTCATTCACAAGGTATCATGCACCGAGATGTTAAGCCACATAATGTAATGATTGACCACGAGCAGCGAAAGTTACGCCTGATAGATTGGGGCCTTGCAGAGTTCTATCATCCAGGAAAGGAATATAATGTTCGTGTTGCTTCAAGATATTTCAAAGGTCCTGAGCTGCTAGTTGATCTCCAAGACTATGATTATTCCTTAGATTTGTGGAGCCTTGGCTGTATGTTTGCTGGAATGATATTCCGCAAGGAACCATTCTTTTATGGCCATGATAACTACGACCAGCTTGTGAAAATTGCGAAGGTGCTTGGAACAGATGAGTTAAATGCTTATCTCAATAAGTATCGTATAGAATTGGATCCAAATCTTGCAGCACTTGTCGGAAGGTACCATTGTTAA 1158 0.4378 MAIRPLQFTVYRRRLISQLLTNETYLFAFSSFSSSASSFSYSPQLSILPFPSPSISSIFILRHIASSAAASSSNLNRHRHPQLTPHSHRLRSFSPLETLAQKIGKSIRRPGAASKARVYSDVNVIRPKEYWDYESLTIQWGEQDDYEVVRKVGRGKYSEVFEGVHCTDNEKCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQQSKTPSLIFECVNNTDFKVLYPTLSDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHEQRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDLWSLGCMFAGMIFRKEPFFYGHDNYDQLVKIAKVLGTDELNAYLNKYRIELDPNLAALVGRYHC* 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00305 385 FunFam Casein kinase II subunit alpha 132 222 - -
Pte12g00305 385 SUPERFAMILY Protein kinase-like (PK-like) 118 370 IPR011009 -
Pte12g00305 385 Gene3D Transferase(Phosphotransferase) domain 1 223 377 - -
Pte12g00305 385 ProSitePatterns Protein kinases ATP-binding region signature. 152 175 IPR017441 GO:0005524
Pte12g00305 385 CDD STKc_CK2_alpha 127 383 IPR045216 GO:0004674|GO:0006468
Pte12g00305 385 ProSitePatterns Serine/Threonine protein kinases active-site signature. 259 271 IPR008271 GO:0004672|GO:0006468
Pte12g00305 385 SMART serkin_6 146 380 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00305 385 FunFam Casein kinase II subunit alpha 223 385 - -
Pte12g00305 385 Gene3D Phosphorylase Kinase; domain 1 137 195 - -
Pte12g00305 385 Gene3D Phosphorylase Kinase; domain 1 198 222 - -
Pte12g00305 385 Pfam Protein kinase domain 146 363 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00305 385 ProSiteProfiles Protein kinase domain profile. 146 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00305 385 PANTHER CASEIN KINASE II SUBUNIT ALPHA 110 383 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00305 Pte-Chr12 2471398 2475843 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00305 144 358 Core Cell Cycle Gene Families AT3G48750 34.956 9.41e-36 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Pte12g00305 Pkinase 9e-56 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00305 K03097 - qsa:O6P43_024562 584.334
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00305 12 2471398 2475843 Pte12g00305 12 2471398 2475843 RCT