Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00299 ATGAAGTACAATCCAAGAGTGACCAGCTCCCGCCGCAAGAACCGGAAGGCGCATTTCACTGCGCCGTCAAGCGTCCGGCGGATTATCATGAGTGCACCACTGTCTCACGATCTTCGCTCCAAGTACAACGTGAGGTCCGTGCCGGTTCGCAAGGACGACGAGGTTCAGGTTGTTCGTGGCACCTACAAGGGACGTGAAGGTAAGGTTGTTCAGGTGTACCGTCGCAAGTGGGTCATCCATATCGAGCGGATCACCAGAGAGAAGGTTAATGGGTCGACCGTGAACGTGGGTATCCACCCATCTAAGGTTGTTGTTACGAAGCTCAGGCTGGATAAGGATCGCAAGTCTTTGCTTGATCGCAAGGCTAAGGGCCGTGCTGCTGCTGACAAGGCCAAGGGTACCAAGTTCACTGCCGAGGACATTATGCAAAGTGTCGATTAG 441 0.5397 MKYNPRVTSSRRKNRKAHFTAPSSVRRIIMSAPLSHDLRSKYNVRSVPVRKDDEVQVVRGTYKGREGKVVQVYRRKWVIHIERITREKVNGSTVNVGIHPSKVVVTKLRLDKDRKSLLDRKAKGRAAADKAKGTKFTAEDIMQSVD* 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00299 146 PANTHER 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER 1 142 IPR005756 GO:0003735|GO:0006412|GO:0015934
Pte12g00299 146 Pfam KOW motif 51 82 IPR005824 -
Pte12g00299 146 CDD KOW_RPL26 52 105 IPR041988 GO:0003723
Pte12g00299 146 MobiDBLite consensus disorder prediction 1 20 - -
Pte12g00299 146 Gene3D - 1 144 IPR014722 -
Pte12g00299 146 FunFam 60S ribosomal protein L26 1 144 - -
Pte12g00299 146 Hamap 50S ribosomal protein L24 [rplX]. 9 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Pte12g00299 146 Pfam Ribosomal proteins L26 eukaryotic, L24P archaeal 8 121 IPR005756 GO:0003735|GO:0006412|GO:0015934
Pte12g00299 146 NCBIfam 50S ribosomal protein L24 9 122 IPR005756 GO:0003735|GO:0006412|GO:0015934
Pte12g00299 146 ProSitePatterns Ribosomal protein L24 signature. 52 69 IPR005825 GO:0003735|GO:0005840|GO:0006412
Pte12g00299 146 SMART kow_9 48 75 IPR005824 -
Pte12g00299 146 SUPERFAMILY Translation proteins SH3-like domain 8 125 IPR008991 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00299 Pte-Chr12 2425336 2426354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00299 1 147 Cytoplasmic Ribosomal Protein Gene Family AT3G49910 88.435 6.95e-95 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00299 K02898 - tcc:18599319 252.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00299 12 2425336 2426354 Pte12g00299 12 2425336 2426354 RCT