Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00298 ATGGGGAAGAAGCAACATAGTAAAGATCGTATGTTCATAACAAAAACGGAGTGGGCTACCGAATGGGGTGGTGCCAAATCCAAAGAGACTCGCACTCCCTTCAAGCGCCTTCCTTTCTATTGCTGCGCGCTCACGTTTACGCCTTTTGAGGACCCTGTGTGCACAACAGATGGGACTGTCTTCGATGTTCTGAATATAATTCCATATATTATGAAATATGGGAAACATCCAGTTTCTGGAGCTCATTTGAAGCAAGAGGATTTGATTCCGTTAACTTTCCACAAGAACTCAGATGGTGAATATCATTGCCCTGTGTTGAACAAAGTATTCACTGAATTCACACATATAGTGGCTATAAAGACTTCTGGAAATGTGTTTTGCTACGAGGCCATTAAAGAATTAAATATCAAGACAAAGAATTGGAAGGAGCTTCTCACTGATGAGCCATTTACTAAGGATGATCTCATTACCATACAGAACCCTAATGCTCTTGATGTCAAAACTCTTGTGGACTTTGATCACGTAAAAAATAATTTGAAAGTAGATGATGAAGAATTCAAGAAAATGAGTTCAGACCCCACTTACAACATAAATGTCTCTGGAGATATCAAGCAAATGCTTCAGGAACTTGGAACTGAGAAAGGAAGGGAGATTGCAATGCTTGGGGGAGGTGGTAGTAAGGCACGAAATGAAAGGGCTGCTGCGCTCACTGCCATCTTGGAAGCAAGGTCACGTATCAAGGAGGATTCTAAATCAAATTCCAATGGTGGGGCTAAACCTTCTCAATCTTTTAGTATTGTGGACGCTGCATCTGCTTCTGTGCATGGGAGAAGCGCTGCAGCTGCTAAAGCTGCTTCATGTGATAAAGCTGCTGCTAGGATAGCCATGCACATGGCAGGTGAAAGGACACCTGTGAATGCGAAAATGGTTAAGAGCCGCTTCACCTCAGGTGCTGCTTCACGATCGTTTACTTCCACTGCTTTTGATCCTGTTACCAAAAATGAATTTGAATATGTGAAAGTGGAAAAGAATCCAAAGAAAAAAGGTTATGTCCAGCTGCATACAACTCACGGTGACTTGAACATTGAGCTGCACTGTGATATAACTCCTAGGACATGTGAGAACTTCATCACTCTCTGTGAACGTGGATACTATAATGGAGTGGCGTTTCATAGAAGCATAAGGAATTTTATGATACAAGGTGGCGACCCAACTGGTACTGGCGGAGGGGGTGAGTCTATATGGGGAAAACCTTTCAAAGATGAACTCAACTCCAAGTTAGTCCATTCTGGTAGAGGGGTTGTTAGCATGGCAAACAGTGGACCTCATACAAACGGTTCCCAGTTTTTCATTTTGTACAAGTCTGCACCGCACTTGAACTTCAAGCACACGGTCTTTGGAGGTGTTGTTGGTGGCTTGACTACACTAGCAGCCATGGAAAAGGTCTCTACGGATGACGACGACAAACCTCTGGAGGAAATCAAAATATTAAGTGTCACAGTGTTTGTCAATCCGTACACTGAACCGGATGAGGAAGAACAACAGAAGGATGCAAAAGAGGAGACCCTGGTGGATGAAGATAATGATAAGGTTGGTGCTTGGTTTAGCAATCCAGGTACTGGAACATCTGAGCCAGGAGCTATTGGAAGTGGTGGGGTTGGGAAATACTTGAAAGTGAAGAATCCTCAGGCCGAATGTGCCACTCTGGATACTAGTACAACTGTTGGTGTGGGAAAGAAAAGGAAAGCAGGAGTTTCCACCGGAGAATTTAAAGATTTCTCTGCTTGGTGA 1791 0.4344 MGKKQHSKDRMFITKTEWATEWGGAKSKETRTPFKRLPFYCCALTFTPFEDPVCTTDGTVFDVLNIIPYIMKYGKHPVSGAHLKQEDLIPLTFHKNSDGEYHCPVLNKVFTEFTHIVAIKTSGNVFCYEAIKELNIKTKNWKELLTDEPFTKDDLITIQNPNALDVKTLVDFDHVKNNLKVDDEEFKKMSSDPTYNINVSGDIKQMLQELGTEKGREIAMLGGGGSKARNERAAALTAILEARSRIKEDSKSNSNGGAKPSQSFSIVDAASASVHGRSAAAAKAASCDKAAARIAMHMAGERTPVNAKMVKSRFTSGAASRSFTSTAFDPVTKNEFEYVKVEKNPKKKGYVQLHTTHGDLNIELHCDITPRTCENFITLCERGYYNGVAFHRSIRNFMIQGGDPTGTGGGGESIWGKPFKDELNSKLVHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHTVFGGVVGGLTTLAAMEKVSTDDDDKPLEEIKILSVTVFVNPYTEPDEEEQQKDAKEETLVDEDNDKVGAWFSNPGTGTSEPGAIGSGGVGKYLKVKNPQAECATLDTSTTVGVGKKRKAGVSTGEFKDFSAW* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00298 596 Gene3D - 329 515 IPR029000 -
Pte12g00298 596 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 344 515 IPR044666 -
Pte12g00298 596 SUPERFAMILY RING/U-box 37 104 - -
Pte12g00298 596 CDD cyclophilin_RING 350 508 - -
Pte12g00298 596 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 385 402 IPR020892 GO:0003755|GO:0006457
Pte12g00298 596 FunFam Peptidyl-prolyl cis-trans isomerase 2 41 96 - -
Pte12g00298 596 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 354 501 IPR002130 GO:0000413|GO:0003755
Pte12g00298 596 CDD RING-Ubox_PPIL2 38 110 IPR026951 -
Pte12g00298 596 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 364 379 IPR002130 GO:0000413|GO:0003755
Pte12g00298 596 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 448 460 IPR002130 GO:0000413|GO:0003755
Pte12g00298 596 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 461 476 IPR002130 GO:0000413|GO:0003755
Pte12g00298 596 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 433 448 IPR002130 GO:0000413|GO:0003755
Pte12g00298 596 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 390 402 IPR002130 GO:0000413|GO:0003755
Pte12g00298 596 SMART Ubox_2 39 101 IPR003613 GO:0004842|GO:0016567
Pte12g00298 596 FunFam Peptidyl-prolyl cis-trans isomerase cyp65 331 515 - -
Pte12g00298 596 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 350 501 IPR002130 GO:0000413|GO:0003755
Pte12g00298 596 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 96 IPR013083 -
Pte12g00298 596 MobiDBLite consensus disorder prediction 577 596 - -
Pte12g00298 596 ProSiteProfiles U-box domain profile. 35 108 IPR003613 GO:0004842|GO:0016567
Pte12g00298 596 SUPERFAMILY Cyclophilin-like 350 511 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00298 Pte-Chr12 2418143 2421750 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00298 1 597 U-box Gene Family AT5G67530 76.783 0.0 919
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00298 K10598 - qsa:O6P43_024547 984.556
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00298 12 2418143 2421750 Pte12g00298 12 2418143 2421750 RCT