Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00292 ATGGGGGCTCCTAAGCTGAAGTGGACTTCAGAAGAAGAAGCTGCCCTTAAAGCTGGAGTTGTGAAACATGGAGCTGGAAAGTGGCGTACAATATTGACCGACCCTGAATTCAGTTCTATTTTGTGCCAACGGTCTAATGTGGATCTAAAGGATAAATGGAGAAATATAAATGTGACCGCAATATGGGGGTCAAGGCAAAGGGCCAAGCTTGCTCTTAAAAGTAACTTACCAGCTCCCAAGCATGACAACAAGTCCTTGGCTTTAGTGACTGTACCCCAAAACAACGACCAAGTTCATGGTGGTAAGCTTGCTGCAGTTTCTGATGGAATGGAGCCAGCTTCCAATCCGAAAGAACCAGCCTCTAGATTGGATTATCTTATAATAGAGGCCATTTCCAGTATGAAGGATAAAAAAGGTTCTGACAGGGCTGCTATTGCTGCTTATATTGAGGAACATTACTTGGCACCGCCAAATCTCAAAAAAATGCTGTCATCAAAATTAAAGCACATGAATGCAAGTGGCAAATTGATTAAGGTAAAACATAAGTATAGGATTGCACCAAGTTCATTTTCTGAGAAAAGAAAAGGTTCGTCCTTGGTAGTTGCAGATAGAAGGCCGAAATATTCTTCAAAAGTACTGAAGACTGAGGTCACCATGGTTACAAAAACCCAGATTGATGCTGAGATAACTAAGATGAAGGGCATGACCGCTCAAGAGGCTGCATCAGCTGCTGCTCAGGCAGTTGCAGTGGCGGAAGCTGCCATTGCAGAAGCTGAGTTAGCAGCCAAAGAGGCAGAGGCTGCCGAAGCTGAAGCTGAAGCAGCACAAGTATTTGCCAAAGCAGCTATGAAGGCGCTGAAAAGCAGAATGCTGCATGTTTGCTGA 885 0.4429 MGAPKLKWTSEEEAALKAGVVKHGAGKWRTILTDPEFSSILCQRSNVDLKDKWRNINVTAIWGSRQRAKLALKSNLPAPKHDNKSLALVTVPQNNDQVHGGKLAAVSDGMEPASNPKEPASRLDYLIIEAISSMKDKKGSDRAAIAAYIEEHYLAPPNLKKMLSSKLKHMNASGKLIKVKHKYRIAPSSFSEKRKGSSLVVADRRPKYSSKVLKTEVTMVTKTQIDAEITKMKGMTAQEAASAAAQAVAVAEAAIAEAELAAKEAEAAEAEAEAAQVFAKAAMKALKSRMLHVC* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00292 294 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Pte12g00292 294 Gene3D - 8 85 - -
Pte12g00292 294 SMART sant 4 59 IPR001005 -
Pte12g00292 294 PANTHER SINGLE MYB HISTONE 4 1 289 IPR044597 GO:0003691
Pte12g00292 294 Pfam Myb-like DNA-binding domain 6 56 IPR001005 -
Pte12g00292 294 SUPERFAMILY Homeodomain-like 2 62 IPR009057 -
Pte12g00292 294 Gene3D - 117 199 IPR036388 -
Pte12g00292 294 FunFam Telomere repeat-binding factor 1 2 58 - -
Pte12g00292 294 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Pte12g00292 294 CDD SANT_TRF 7 57 - -
Pte12g00292 294 SUPERFAMILY "Winged helix" DNA-binding domain 118 195 IPR036390 -
Pte12g00292 294 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 116 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte12g00292 294 Pfam linker histone H1 and H5 family 125 181 IPR005818 GO:0000786|GO:0003677|GO:0006334
Pte12g00292 294 Coils Coil 248 280 - -
Pte12g00292 294 SMART h15plus2 117 182 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00292 Pte-Chr12 2392013 2399921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00292 1 290 Single Myb Histone (SMH) Gene Family AT5G67580 53.559 3.23e-76 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pte12g00292 Linker_histone 7.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00292 K09422 - qsu:112031030 320.472