Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00282 ATGGCAGAAACGGAAGATAAAGTACGTGAAGGCGATCACGTGGAGGAGGACGAAGAAGAAGTTACAAGCTTTGAAGAGCTTGGATTGGATGCTCGTCTTGTCCGTGCTTTGCTTAAGAAAGGAATCAATAAACCTACTCCAATTCAACGAACTGCTATTCCTTTGATTCTCGAAGGCAAAGACGTGGTAGCTCGAGCAAAGACTGGTTCCGGGAAAACATTTGCCTACCTTCTTCCGTTGCTGCAGAAGCTGTTCAGTGATTCTGTTTCCAAAAACAAGCTTGCTCCCAATGCCTTTATTCTTGTTCCAACTCAGGAACTATGTCGGCAGGTCTATTTGGAAATTTCATCGCTGGTTGAGCTATGCAGAGTTCAGTTAAAAGTCGTACAGTTGAAAAGCAGTATGCAACTTAAGGATTTGCGGCCAGCATTGGCAGGTCTTCCCAATATCGTGGTATCAACACCTGCCTGCATCTCAAAGTGCTTGTCAGGCGGAATACTGCAACCTGTTTCTATCGGTGATTCACTTGAAACTCTGGTTCTTGATGAGGCTGATCTTTTATTGTCATATGGATATGAAAATGACATTCAAATGCTTGCACCTCATATTCCAAGAAGTTGCCAGTGTCTTTTGATGTCTGCAACTACAAGTGCTGATGTTGACAAACTGAAGAAGTTGATACTACACAATCCCTTTATTTTGACTTTGCCAGAAGTTGGAAATAAAAAAGATGACATTGTTCCTAGAACCGTTCAGCAATTTTGGATCTCTTGCAGTGCTCATGATAAGTTGCTTTACATCCTTGCTCTGTTGAAATTAGAGCTAGTTCAGAAAAAGGTTTTGGTGTTCACTAATACTATAGACATGAGTTTCAGGGTGAGACTATTTTTGGAAAAGTTTGGTATAAAGTCTGCTGTTTTGAATGCTGAATTACCACAGAATTCTCGTCTCCACATTATTGAGGAATTCAATGCAGGGCTCTTCGATTATCTAATCGCGACTGATGCCTGTCAATCAAAGGAGAATGAAGCAACAAAGAACGAGAGCAATGAACAAGGAAGATCAATCAAGCATATAAAAAAAAAGTTGGACTCAGAGTTTGGTGTAGTGAGAGGCATTGACTTTAAAAATGTATACACGGTTATAAACTTTGACATGCCTCTAAATGTTGTGGGTTACATACATCGGATTGGACGTACTGGAAGAGCATACAATACTGGTTCTTCTATCTCCTTAGTATCTCCAGATGAGATGGAAATTTTTGAAGAAATAAAATCTTATATAGGTGATGGTGAAAATCAGAGCAGGAACTTAATTGCTGAGTTTCCTTTGCTCACAAAAAGTGCAGTTGAATCTTTACGATACAGAGCTGAGGATATTGCGAAGAGTGTGACAAAAATTGCTGTACGTGAATCGCGGGCTCAGGATCTGAGGAACGAAATTCTCAACTCTGACAAGTTGAAGTCTCATTTTGAAGCTAATCCTAGAGATTTAGAACTTTTGAAGCACGACAAACTTCTGAGCAAGAATCTCCCTCCACCTCACCTTCGAGATGTTCCTGATTACCTGATGGACCAAACCACAAAAGAAGCTAGAGAAAGGGTTAGGCTTGCAAGGGATGCGATGGGCAACAGAAATCGACGCCAGGGATCTAGGAAAAAGTTCAGAAAAAGTAAAGATCCTCTTAAGGCCGTTTCCGCGGATGCATCAAAAAGAGGAGGCAAAACTGGCGCGAAAAGGGAAGTTAGTCATAAGGGTGATGGAACTAAGAATAAGAAGCAGAAGTGTTAG 1791 0.4098 MAETEDKVREGDHVEEDEEEVTSFEELGLDARLVRALLKKGINKPTPIQRTAIPLILEGKDVVARAKTGSGKTFAYLLPLLQKLFSDSVSKNKLAPNAFILVPTQELCRQVYLEISSLVELCRVQLKVVQLKSSMQLKDLRPALAGLPNIVVSTPACISKCLSGGILQPVSIGDSLETLVLDEADLLLSYGYENDIQMLAPHIPRSCQCLLMSATTSADVDKLKKLILHNPFILTLPEVGNKKDDIVPRTVQQFWISCSAHDKLLYILALLKLELVQKKVLVFTNTIDMSFRVRLFLEKFGIKSAVLNAELPQNSRLHIIEEFNAGLFDYLIATDACQSKENEATKNESNEQGRSIKHIKKKLDSEFGVVRGIDFKNVYTVINFDMPLNVVGYIHRIGRTGRAYNTGSSISLVSPDEMEIFEEIKSYIGDGENQSRNLIAEFPLLTKSAVESLRYRAEDIAKSVTKIAVRESRAQDLRNEILNSDKLKSHFEANPRDLELLKHDKLLSKNLPPPHLRDVPDYLMDQTTKEARERVRLARDAMGNRNRRQGSRKKFRKSKDPLKAVSADASKRGGKTGAKREVSHKGDGTKNKKQKC* 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00282 596 PANTHER RNA HELICASE 15 534 - -
Pte12g00282 596 MobiDBLite consensus disorder prediction 1 20 - -
Pte12g00282 596 SMART helicmild6 291 404 IPR001650 -
Pte12g00282 596 CDD SF2_C_DEAD 251 413 - -
Pte12g00282 596 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 269 450 IPR001650 -
Pte12g00282 596 Pfam Helicase conserved C-terminal domain 262 404 IPR001650 -
Pte12g00282 596 SMART ultradead3 41 254 IPR014001 -
Pte12g00282 596 Gene3D - 239 442 IPR027417 -
Pte12g00282 596 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 53 234 IPR014001 -
Pte12g00282 596 CDD DEADc_DDX56 29 236 - -
Pte12g00282 596 MobiDBLite consensus disorder prediction 538 596 - -
Pte12g00282 596 Gene3D - 1 236 IPR027417 -
Pte12g00282 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 42 425 IPR027417 -
Pte12g00282 596 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 235 IPR027417 -
Pte12g00282 596 MobiDBLite consensus disorder prediction 573 589 - -
Pte12g00282 596 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 22 50 IPR014014 GO:0003724
Pte12g00282 596 Pfam DEAD/DEAH box helicase 46 223 IPR011545 GO:0003676|GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00282 Pte-Chr12 2311417 2316182 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00282 19 427 Eukaryotic Initiation Factors Gene Family AT3G19760 27.845 5.69e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00282 K14810 - qsa:O6P43_033938 882.093