Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00276 ATGGGGAGAGCTCCTTGCTGTGACAAAGCCAACGTCAAGAAAGGTCCCTGGTCACCTGAAGAAGACGCCAAACTGAAGGCTTACATTGAGGAGCACGGAACAGGCGGAAACTGGATTGCCTTACCGCAGAAAATAGGCCTGAAGAGATGTGGCAAGAGCTGCCGCCTCAGATGGTTGAATTATCTCAGGCCAAACATCAGACATGGGGGTTTCTCTGAGGAAGAAGATAACATCATTTGCAGTCTCTATGTTAGCATCGGAAGCAGGTGGTCTATTATAGCTGCTCAATTACCTGGACGAACAGACAATGATATAAAGAATTATTGGAACACAAGATTGAAGAAGCAGCTCTTAGGAAAACAGCGGAAAGAGCAGCAGGCACAAGCTCGACGTGCAGTCAGCCTAAAGCAAGAGATGAAGAGAGAAATTCAGAATTTGAACATGGCAGCTGAAGGGGTCACAAACCCAGTCCCCAGTTGGACTGTGGGGTATAATCCCACAGTAACTATGCCATTGACGGATTTCTCAAATCATGATTATCCTTTTGATCAAACATACGTAAAGGAGTTGCTGATCAAGCTCGGTGGTAGATTTTCAGTTAACGATCATCATCAACAATCATCCGACAGTTCTACTGTTCCCACTAGCACGAATTGGCAATACAATCCTCGCTATGCGGATTCTTTTCCTCCGCAACAATTATATGAAACCCCCATGAACGTGGTAAACGCAGTTACAGAGATGAATACAACAAACGACGGCAACTCCGGCCTGTCCGAAAACGCTTTTCGAGTGATGAATGATAACTTCCCTAACGAATTGAGTCATTTGAACGGTACTCAGCCAATAGAAAGGGACGACGGCTTAATGGAGCGATACTTTGCAATGGAGGCCATGGACATGGTCAATGGTAGCAGCAACATGACAAGCTCCACGGAGAGTGGCAGCTGGGGAGACATGAGCTCTCTGGTTTATTCATCACCTTTGGAATCATACTATGCAGCTTGCCAGCAAGGAATCCCTCAAGATTTTGCTTTTGAGGAGCCAAGATACTTAGGGCTGCAATAG 1068 0.4597 MGRAPCCDKANVKKGPWSPEEDAKLKAYIEEHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIRHGGFSEEEDNIICSLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKQLLGKQRKEQQAQARRAVSLKQEMKREIQNLNMAAEGVTNPVPSWTVGYNPTVTMPLTDFSNHDYPFDQTYVKELLIKLGGRFSVNDHHQQSSDSSTVPTSTNWQYNPRYADSFPPQQLYETPMNVVNAVTEMNTTNDGNSGLSENAFRVMNDNFPNELSHLNGTQPIERDDGLMERYFAMEAMDMVNGSSNMTSSTESGSWGDMSSLVYSSPLESYYAACQQGIPQDFAFEEPRYLGLQ* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00276 355 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Pte12g00276 355 PANTHER OS09G0431300 PROTEIN 1 314 - -
Pte12g00276 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Pte12g00276 355 CDD SANT 71 113 IPR001005 -
Pte12g00276 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Pte12g00276 355 FunFam Transcription factor RAX3 7 68 - -
Pte12g00276 355 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Pte12g00276 355 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Pte12g00276 355 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Pte12g00276 355 Gene3D - 7 68 - -
Pte12g00276 355 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Pte12g00276 355 CDD SANT 16 62 IPR001005 -
Pte12g00276 355 SMART sant 67 115 IPR001005 -
Pte12g00276 355 SMART sant 13 64 IPR001005 -
Pte12g00276 355 Coils Coil 122 149 - -
Pte12g00276 355 Gene3D - 70 144 - -
Pte12g00276 355 FunFam Transcription factor RAX3 70 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00276 Pte-Chr12 2254278 2255812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00276 1 326 MYB Transcription Factor Family AT3G49690 49.852 2.06e-89 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pte12g00276 Myb_DNA-binding 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00276 K09422 - qsa:O6P43_033945 378.637