Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00267 ATGGACCATCATCGTTACAAGTATTCATACGATTTCATTGCAACTCCTGAGGTTGAGAAAGCCACACTGCAAAAAGATAGCTACTGTTTCCAGCCATGTTTGTCTCCTGAAAGCGATTCCTGTCGATCTTCTGATCCTTCTTTAAACACAGTGAATCCTTTGAAAATGAAGGACACGGTCACCTCTGTCAGCAATTCACCCATTGATGACACGAGCTTCGAGTCTGAGAGACCAGCAAAACAACTCAAGAGCTGTGTCAACATCACTGCTCCACTGTCTCCACCCATTCCAGCTGACTCTGTTAAAAACAAAACTTTGGCTTCACAAAAATCTGCATCGCCTCTTAAGTCTTACATTCTTTCCTTTAATAAACCGAGCTCAACTCCAGTAGAGGCAACTGAGCATTTTCAGTCTTCTCAAGCTTGCGACTTGGAGGGGAGGAGCAAAGGGGGTACTCCACCAGGAGCTAGAAATTCACAGTTCTCCCGCTTGATTTCTGGGTTTTGTGTGGATGAACCCAACAGTGGTTCAACCAATAAGGAGAAGCGAGGCCGTTCAACCCCAAAAACTTCTTATCACTCCAAAGATCACATAATGGCTGAGAGAAAGCGGAGAGAAAATCTAAGCCTGCGCTTCATTGCACTCTCCGCCACTATCCCTGGCTTGAAGAAGACGGACAAGGCTTCTGTTCTTGGAGATGCCATAAGGTACGTGAAGCAGCTTAAGGATCGAGTGAAAGAGCTGGAGGAAGATGCCAGCAAGAGCAGAGTAGAGTCTGTAGTTTATGTGAAGAAATCTGTTGTCTCAGCTGGTGAGGATGACTCTTTAGGTGATGATAACTCTGAAGATGGCACTAATTATGTTGCACTGCCTGAGGTTGAAGCAAGAGTGGCTGGAAAGAACATACTTGTTCGAATTCATTGCCTTAAACAAAAGGGATTGTTGGAGAAATTGATTGGAGAAATAGAGAATCTTCATCTGGTAGTTCTCAACAGCTGCGCCTTCCCATTTGGGAATTCAATTCATGACATAACCATTGTAGCCCAGATGGACGTGGAATACAACATTTCTGTGAAGGAGCTGGTCAAACACCTGAGACTGGCAATGGCAAAGTTCACTTGTGTATGA 1128 0.4459 MDHHRYKYSYDFIATPEVEKATLQKDSYCFQPCLSPESDSCRSSDPSLNTVNPLKMKDTVTSVSNSPIDDTSFESERPAKQLKSCVNITAPLSPPIPADSVKNKTLASQKSASPLKSYILSFNKPSSTPVEATEHFQSSQACDLEGRSKGGTPPGARNSQFSRLISGFCVDEPNSGSTNKEKRGRSTPKTSYHSKDHIMAERKRRENLSLRFIALSATIPGLKKTDKASVLGDAIRYVKQLKDRVKELEEDASKSRVESVVYVKKSVVSAGEDDSLGDDNSEDGTNYVALPEVEARVAGKNILVRIHCLKQKGLLEKLIGEIENLHLVVLNSCAFPFGNSIHDITIVAQMDVEYNISVKELVKHLRLAMAKFTCV* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00267 375 Gene3D - 182 257 IPR036638 GO:0046983
Pte12g00267 375 MobiDBLite consensus disorder prediction 153 175 - -
Pte12g00267 375 MobiDBLite consensus disorder prediction 176 196 - -
Pte12g00267 375 Coils Coil 231 258 - -
Pte12g00267 375 Pfam Helix-loop-helix DNA-binding domain 197 242 IPR011598 GO:0046983
Pte12g00267 375 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 257 IPR036638 GO:0046983
Pte12g00267 375 MobiDBLite consensus disorder prediction 136 196 - -
Pte12g00267 375 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 192 241 IPR011598 GO:0046983
Pte12g00267 375 SMART finulus 198 247 IPR011598 GO:0046983
Pte12g00267 375 PANTHER BHLH TRANSCRIPTION FACTOR 72 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00267 Pte-Chr12 2204857 2207381 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00267 154 372 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 42.081 2.54e-53 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte12g00267 HLH 5.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00267 - - mesc:110630412 238.424
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00267 12 2204857 2207381 Pte12g00267 12 2204857 2207381 RCT