Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00266 ATGTTTGAAGACATTGCTGTAGAAGAAATCAACATTTCAGCGGATCATGGTGACCATCTGCAGCACTCATTCTCATCTGAGAACGAGAGCTCTATCTCTTCTCCTGCATTGAACAACAATGAAAATGCTCACATACCAATCTCTCCAATGTTTACAGATTTTTCCAATGACGAGTTTACAGGTTCAGAGAGGCCTGTGAAAGTAAAACAGGTCAAAGCAAATAGATGTAATTATAGTAGCAGTCATACTAACAGGAACTCTAGCTTAACACACTTAGTCCCTCTTTCATCCAAGTCTCAATTTCTGCTGTCTTTTGAGAATCCAAATTCTTCACCCACTTGTTCAGCTAACAAAAATCACATTCATGATTGCATGGGCAAACAATCATCAGATGCAGAACACTGTGCTTCAAATACCAAAAAAGCAGGAACCAAGAGGAACCATTCCGCAACAAGATCTCCATCTCACGCCAAAGACCACATAATGGCAGAGAGGTTGCGAAGGGAAAAGCTCACACAGCTTTTCATCGCTCTCTCAGCCCTTGTCCCTGGCCTGAAAAAGGTGACGCTAAATCTAAAGTTTTGTCTATCAATCCGAGTTGCAGATGTAATGCTCAACTGGATGTTTCAAATTTGTATTAACTATCGGTTGATTTCTATTAATCAACAGGTGGATAAAGCTTCCGTGCTTGAGGATACGATCAAGTACGTGAAGCAGCTGCATCAACGAGTGAATATGCTGGAAAATCAAACCAAGAAGAGAACAGTTGAATCTGCGGTGCTGGTGATGAAACATAACCTGTCAGTTTCAGGTGTTGATGATGATGACCCATTATCCTGTGAGGAAACCTCTCGAATTACTCAGAGCCACGATTCTCGGTTTACCGATGATTCTCTCGGTGAAGTTGAAGCAAGAATCTCTGACAAGCAAGTACTGATCCGAGTCCATTGCCAGCGGCAGATGGGAGTGGTGAGTAGAATCATGAAGGTCCTCGAGAGCTTTCACCTTTCAGTACTCAGCACTAGCGTTTTAACATTTGGAGAACGCACTCTTCAGATTACCATTATTGCCAAGATGGAGAGTGAGTTGAGCATGGCAGTGAAGGACCTTGTCAAAAGGCTGCAGATAGCTTTATGA 1137 0.4248 MFEDIAVEEINISADHGDHLQHSFSSENESSISSPALNNNENAHIPISPMFTDFSNDEFTGSERPVKVKQVKANRCNYSSSHTNRNSSLTHLVPLSSKSQFLLSFENPNSSPTCSANKNHIHDCMGKQSSDAEHCASNTKKAGTKRNHSATRSPSHAKDHIMAERLRREKLTQLFIALSALVPGLKKVTLNLKFCLSIRVADVMLNWMFQICINYRLISINQQVDKASVLEDTIKYVKQLHQRVNMLENQTKKRTVESAVLVMKHNLSVSGVDDDDPLSCEETSRITQSHDSRFTDDSLGEVEARISDKQVLIRVHCQRQMGVVSRIMKVLESFHLSVLSTSVLTFGERTLQITIIAKMESELSMAVKDLVKRLQIAL* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00266 378 SMART finulus 161 246 IPR011598 GO:0046983
Pte12g00266 378 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 155 240 IPR011598 GO:0046983
Pte12g00266 378 MobiDBLite consensus disorder prediction 135 158 - -
Pte12g00266 378 Coils Coil 230 250 - -
Pte12g00266 378 Pfam Helix-loop-helix DNA-binding domain 160 241 IPR011598 GO:0046983
Pte12g00266 378 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 264 IPR036638 GO:0046983
Pte12g00266 378 PANTHER BHLH TRANSCRIPTION FACTOR 19 378 - -
Pte12g00266 378 Gene3D - 145 255 IPR036638 GO:0046983
Pte12g00266 378 MobiDBLite consensus disorder prediction 135 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00266 Pte-Chr12 2200974 2203299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00266 141 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 41.597 1.14e-46 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte12g00266 HLH 7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00266 - - fve:101302784 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00266 12 2200974 2203299 Pte12g00266 12 2200974 2203299 RCT