Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00262 ATGGCAGCTGAGCTTGGTTTTCTCTCCATGACTCAGATCCAAAAATTGGCTCAATACCAAAACAGCAGCCAAAATCAACGTACAGAAAACCCTAATTCCTTGACCTTATCATATTCTATGTGGAACCCTAGGGAAATTCATCAAGAAGATGATGATTCGTGGGAGGTTAGAGCTTTTGCTGAAGATACCAATGGTATGGGGAGCACTTGGCCTCCTAGGTTTTACAGCTGCACCTTTTGTGGAAGAGAGTTCCGATCGGCCCAAGCCCTAGGAGGACACATGAATGTCCACCGCCGTGACCGAGCACGACTCCACCAAGCACAGCCGTCTTCTTCCATAATTTCCAGTCCGTCTCCCAATTTTTCACATATGATCCCAGCACAAGAATTTGTGCCAAATGATGGATTATGCTTCTTCTACGGCCAGATACCTAAACCTAGTAAGACTTTCACTCCCATAGCTCCGAGAGCAACGATTAGCTCATCCTCTAAGTTCCTCACCATGTCACAACAACCAACAGACAACTTGATTTCACCTTCATCCAAGAATCTTCCTGTGCCACAAACAACAGCGTCTAACTCTTCATATCGTTACTGTGGCAAAGCTCAAGAAGTCTCGGCTTCCTCAGAGAAGGGCCACGAAGAGCTTGATTTAGAGCTCAGACTTGGGCACAGAAGAACACTAGCCTGA 690 0.4623 MAAELGFLSMTQIQKLAQYQNSSQNQRTENPNSLTLSYSMWNPREIHQEDDDSWEVRAFAEDTNGMGSTWPPRFYSCTFCGREFRSAQALGGHMNVHRRDRARLHQAQPSSSIISSPSPNFSHMIPAQEFVPNDGLCFFYGQIPKPSKTFTPIAPRATISSSSKFLTMSQQPTDNLISPSSKNLPVPQTTASNSSYRYCGKAQEVSASSEKGHEELDLELRLGHRRTLA* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00262 229 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 102 IPR013087 -
Pte12g00262 229 SMART c2h2final6 75 97 IPR013087 -
Pte12g00262 229 MobiDBLite consensus disorder prediction 171 195 - -
Pte12g00262 229 PANTHER OS07G0101800 PROTEIN 48 225 - -
Pte12g00262 229 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
Pte12g00262 229 Gene3D Classic Zinc Finger 65 123 - -
Pte12g00262 229 SUPERFAMILY beta-beta-alpha zinc fingers 72 102 IPR036236 -
Pte12g00262 229 Pfam C2H2-type zinc finger 75 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00262 Pte-Chr12 2110455 2111836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00262 40 224 C2H2 Transcription Factor Family AT4G17810 39.267 2.52e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pte12g00262 zf-C2H2_6 1.3e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00262 - - jre:108984087 233.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pte12g00262 12 2110455 2111836 Pte12g00262 12 2110455 2111836 RCT