Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00259 ATGGATACACGGGAACAACCGCCGCAGCCGCAAGGTCCACAAGGACTGCATCAACACCAGCAGCAACAGCATCACCATCATCATACTGTTCTTCCTCCGCCGAACCTGATGGTGGGACCCGCATCGTATCCGAGTAATATGTCCATGACTAGCGCCAATGTGAACTCGAGCGCTAATCCTTCTTCAATGATCACTACCAATTCTTCGGCTACCATGATGTCACCCGCCACCGCTCGATTCCCTTTCAACTCCGTCATCCCACAACCGCAACTGCCTACTAAGCCTTCTGATTCACTCAACCATGCCAGTTCGTACGAAGGATCGTCGCCTGCGCTGAGGCCTTGTAATCCTGCCACTGGTTTCAACACGGATTCCGCCAAGAAGAAGAGAGGGAGGCCAAGAAAGTATTCGCCTGACGGTAACATTGCTTTAGGCTTGGCACCAACGCCTATGCCCTCCTCTGCCGGCCAGGCAGATTCCACTGGAACGCTCTCCTCCGACCCTCCGCCAAAAAAACACCGAGGAAGGCCTGCCGGTTCAGGAAAGAAGCAGTTGGATGCTCTGGGAGCTGGCGGAGTTGGGTTTACTCCTCATGTGATCATGGTGAAAGAAGGGGAAGATGTTGCTTCCAAGATAATGGCCTTTTCACAACAAGGGCCTCGCGCAGTTTGTATTCTCTCTGCCAATGGTGCTGTAAGTAATGTTACCCTTCGGCAGCCAGCAACAGGTGGTGGTACAGTTACATATGAGGGTCAATTTGAAATTGTTTCTCTATCAGGTTCTTTTGTAATCTCCAATGATAATGGCGGTTGTAGAACTGGCGGTTTGAATGTGTCTCTAGCAGGGTCTGATGGACGAATTTTGGGTGGTGGAGTTGCAGGGATGCTGACAGCAGTTTCGACAGTGCAGGTCATTGTAGGCAGCTTTATTGCTGATGGGAAAAAATCGAAGTCAAATCCGGGGATATCTAGTCCTTCTTCAGCACCGGCATCATCCCAGATGTTAAACTTTGGTGCACCTATGACACCAGCTACTCCTCGCTCACAAGGTCCCTCTAGCGAGTCATCTGATGACAATGTTGACGTCCCTTTTAACAGAGGGCCGGACCTCTACAGCAATGCAAATCAACCACTGCATAACATGCCGATGTACCACCATTTATGGGCTGGCCAATCTCAACAGTAA 1185 0.5063 MDTREQPPQPQGPQGLHQHQQQQHHHHHTVLPPPNLMVGPASYPSNMSMTSANVNSSANPSSMITTNSSATMMSPATARFPFNSVIPQPQLPTKPSDSLNHASSYEGSSPALRPCNPATGFNTDSAKKKRGRPRKYSPDGNIALGLAPTPMPSSAGQADSTGTLSSDPPPKKHRGRPAGSGKKQLDALGAGGVGFTPHVIMVKEGEDVASKIMAFSQQGPRAVCILSANGAVSNVTLRQPATGGGTVTYEGQFEIVSLSGSFVISNDNGGCRTGGLNVSLAGSDGRILGGGVAGMLTAVSTVQVIVGSFIADGKKSKSNPGISSPSSAPASSQMLNFGAPMTPATPRSQGPSSESSDDNVDVPFNRGPDLYSNANQPLHNMPMYHHLWAGQSQQ* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00259 394 Gene3D - 197 321 - -
Pte12g00259 394 Pfam Plants and Prokaryotes Conserved (PCC) domain 197 309 IPR005175 -
Pte12g00259 394 MobiDBLite consensus disorder prediction 83 189 - -
Pte12g00259 394 ProSiteProfiles PPC domain profile profile. 191 330 IPR005175 -
Pte12g00259 394 SMART AT_hook_2 171 183 IPR017956 GO:0003677
Pte12g00259 394 SMART AT_hook_2 127 139 IPR017956 GO:0003677
Pte12g00259 394 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 62 364 IPR039605 GO:0003680
Pte12g00259 394 MobiDBLite consensus disorder prediction 153 167 - -
Pte12g00259 394 MobiDBLite consensus disorder prediction 314 376 - -
Pte12g00259 394 SUPERFAMILY AF0104/ALDC/Ptd012-like 195 311 - -
Pte12g00259 394 MobiDBLite consensus disorder prediction 1 19 - -
Pte12g00259 394 CDD DUF296 196 309 IPR005175 -
Pte12g00259 394 MobiDBLite consensus disorder prediction 1 68 - -
Pte12g00259 394 MobiDBLite consensus disorder prediction 317 360 - -
Pte12g00259 394 MobiDBLite consensus disorder prediction 83 123 - -
Pte12g00259 394 MobiDBLite consensus disorder prediction 41 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00259 Pte-Chr12 2082090 2086331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00259 120 395 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 52.978 6.74e-83 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00259 - - qsa:O6P43_033975 491.886