Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00255 ATGATTAACGCATGCTGGAACTTTTGGCAGGCTATAATGGAAGATCCCAGTTTCATCCAATCGCACCAGACAGATCCGCATGGCTATGAGTTTGGGAATCTTGATTATCAGACATTGACTATGGAGAGCTTTTTGTCCTATCCTCAGAGTCTTTCCTCCATTGACGACGAACAGAAGTCCAATATTTGGAACAGTTACACCCCTGAAAGCAAACCTTTCAAGCCTGCTGCAGCTTCTAACTCCTTGTCCGCAATCATTTCTTTTCAAAATTCAAATGCACTTTCAGAAGCCTCCCGGCAAGTTGAAGGTGGAATTAGCAACAGGAGGAAAAGAAGTATCGATGATGAGACTTACAAAGCTGTTGCTTTGATTTCTGAAGATTCTTACGATCAAGGAGATAAGTACTTCAAAAAACATAGGAAGGTCGGTGCCACGACAAGAAGCCTTCTACATAATCAAGATCACGTAATGGCCGAGAGGAAACGCAGAGAAAAGCTTAATCAGAGGTTTGTGGCTCTTTCGGCTGTTCTCCCAAGCTTGAAGAAGATGGATAGGGCATCAGTTCTGGAAGATGCTATCGATTACTTGAGGAAGCTTAAAGAACGAGTGAGAATCCTGGAAGAAAAGACTGCTGTACAAACTGTGGAATGTGCAGTCCTTCTAAAAAGATCTCATGTTTCAGTCATCGACGCAGATTCTTCCTTGTGCGTTGAAAACTTAGAAAGCTACATGCAGTTTCATGACTCGTCTCTCCCTGATATTGAAGCTAGGGTTTCGGATAAGGATGTGCTTATAAAGATTCACTGCGAGAATCATAGAGGATGTGTGGCTAAAATATTAAACGAATTAGAGAAACTTCATCTCTCCATTCACAAGACCAGTGTCTTACCCTTTGGAAATTCCATTCTTGACATAACCATAGTTGCTCGGATGGATGTGGAATACTGCTCGACAACTAAAGATCTAGTGAGAAACCTAAGAAATGCTATTGTGCATTATTTCATGTGA 1008 0.4157 MINACWNFWQAIMEDPSFIQSHQTDPHGYEFGNLDYQTLTMESFLSYPQSLSSIDDEQKSNIWNSYTPESKPFKPAAASNSLSAIISFQNSNALSEASRQVEGGISNRRKRSIDDETYKAVALISEDSYDQGDKYFKKHRKVGATTRSLLHNQDHVMAERKRREKLNQRFVALSAVLPSLKKMDRASVLEDAIDYLRKLKERVRILEEKTAVQTVECAVLLKRSHVSVIDADSSLCVENLESYMQFHDSSLPDIEARVSDKDVLIKIHCENHRGCVAKILNELEKLHLSIHKTSVLPFGNSILDITIVARMDVEYCSTTKDLVRNLRNAIVHYFM* 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00255 335 Pfam Helix-loop-helix DNA-binding domain 154 199 IPR011598 GO:0046983
Pte12g00255 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 150 199 IPR011598 GO:0046983
Pte12g00255 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 155 221 IPR036638 GO:0046983
Pte12g00255 335 Gene3D - 151 218 IPR036638 GO:0046983
Pte12g00255 335 Coils Coil 189 209 - -
Pte12g00255 335 SMART finulus 156 205 IPR011598 GO:0046983
Pte12g00255 335 PANTHER BHLH TRANSCRIPTION FACTOR 16 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00255 Pte-Chr12 2049593 2050971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00255 129 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 45.455 3.31e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pte12g00255 HLH 1.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00255 - - qsu:112005400 268.47