Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00254 ATGGCTGCTGCGGTTGGCTCATCAAGCTCCAGAAGTTTGTTGGACCCAAGGAATGAGAAGAGAAGATCCAGTGTAGTTACTAGCACAGAAACAGCGCAATTGGTATGTGGAGGCTGCCATACTTTACTCATGTATATTCGTGGGGCAACAAGTGTGCAGTGCTCTTGTTGTCACACTGTTAACTTGGCTCTTGAAGGTATTTTCACTTCTAACTATGATACTCAAGTGCACAAACTTCTAACATGA 246 0.439 MAAAVGSSSSRSLLDPRNEKRRSSVVTSTETAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEGIFTSNYDTQVHKLLT* 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00254 81 SUPERFAMILY Multiheme cytochromes 29 65 IPR036280 -
Pte12g00254 81 MobiDBLite consensus disorder prediction 1 25 - -
Pte12g00254 81 PANTHER PROTEIN LSD1 27 66 IPR040319 -
Pte12g00254 81 Pfam LSD1 zinc finger 36 60 IPR005735 -
Pte12g00254 81 NCBIfam zinc finger domain, LSD1 subclass 33 62 IPR005735 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Pte12g00254 zf-LSD1 5.5e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00254 - - lper:127322611 82.0333