Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00253 ATGGGTTGCACCGTGAAAGATAAGCATATCCGATCCAATCGAAGAACTCGATCGGCGAAAACCGATACAGGTACGTGCTGTCATCAAGATAGAGCTGCGATTTCTGAAGTGACACTCGAACCGGCTGTTAATACGTTGAAAATGTATCCGGGTCTCAATTCGGGTCAAATTCCGATTCCCATTTCAGTTCCCAACCCTAACCCTAATTCCAATCCTAACGCTGAAGAAAACGGAGGCTGGGGTTACTGCACCGAGGAGCAATTGGAAGAAATCTTATTGAGGAACTTGGAGTTTTTGTACAATGAAGCTGTCGCAAAGCTTGTTTCTTCGGGTTATGATGAAGATGTTGCGGTGGAAGCTATTTTGCGAAGTGGACATTGCTATGGAAGCATGGATGTATCGCAGAACATTGTGCGTAACTCATTGGAATATCTACAAAGCGTCGATTGTGGTGGGAATGCAGACGAGTCTGAGGTCGTCTTTTCAGATTTGAGGCAGTTGGAGGAATACTCGCTCGCAGCTATGATATGTATGTTGCAGCAAGTGAGACCTCATTTGAGTAAAGGCGACGCTATGTGGTGTTTGCTCATGAGTGATCTTCATGTGGGTCGGGCTAGCGCTATGGAAATTCCCGTGCTTCCATCGCCTGCAAATGCCAATGGGTGCAGTGGTCCTGCGTGTAATAGTGTTGACACGAGTAACCATGGGGCTGGTGTGATGCCACCTGCGCTTTGCAGGTTTCACGGTGGCTGGGGATTTGGAAATAGTGGAGCCTCTGAGTTACCGGTTGATGGTTTTTTCTCTTATGGTTCAGAGCTCACTTTACAGAGAGATATTGAGTGTCCCAAGAGGTTTAATCTTTCCCCCACCATGAAATCTTTATTGAGAAGGAATGTAGCCGCGTTTGCAGCTGGTTTTCGAGCTAACTCTAAACAGCTGCAGACACAAGCTAAAGCCTCTTCTGGTGCTCTGCTTAATAATGCTGCGCCCGTTGCATCAGGTGTTGAAGTACCTGCTGAGCAATCTGGGGATTCTCAAAACTTAAAGAACCAAGATATTATCAACACGATTATGGATAAATTTCGTGATCTGAACCTGGAAGGAAATTTGGAGTTTGAGACAGAAGATCAGAGGGATGAAGTTGTAGTCACCTTGCTTCATCAGGTCAAGCGACTCGAGAAGCAAGTGAAGGAGAGGAAGGAGTGGGCCCATAAAAAAGCAGTGCAAGCTGCGACAAAGCTCAGCAATGATCTTACTCAGCTTAAACTTTTGAGGATGGAAAGAGAAGATAATCAAAGATTGAAAAAAGGGAAGCAGACTCTCGAGGATTCGACAATGAAGAGATTGTCGGAGATGGAAAATGCCTTGAGAAAGGCTAGTGGTCAAGTGGACAGGGCTAATGCAGCTGTGAGACGACTTGAGGTGGAGAATGCAGAGATCAGAGCAGAGATGGAAGCTTCCAAACTAAGGGCATCCGAGTCAGCTAAAAATTGTATGAAGGTTGAGAAGAGGGAGAGGAAATGCAAGAAGAAGCTTGCTGCCTGGGACAAACAAAAAGCCAAGTTGGAGGAGGAGATTTCTGAAGAAAAAGAGAAGATCTTGGAGTTGCAGCGGAATTTGGCTCAGATTAAGCAGACTCAGAAAGAAACAGAGTTGAAGTGGAGGGAGGAGATTAGGGCAAAAGAGGAAGCATCAGCATTGGTGGATGAGGAGCGACGCTCTAAAGAAGCTGCTGAGTCAAACAATAAAAGGAAGCTTGAGGCCTTGCGCTTGAAGATAGAGATAGATTTCCAACGCCACAAGGATGATTTACTGAGACTTGAGCAGGAACTTTCTCGGTTGAAACCATCTGCTCAGTCCACTGACCAGCCCAATCGAACAAGCCCTTCACCTGCAAGAGAGTCTTCGGATAAATCAAATCCTGAAGGGGAGACAATTGCTGCGCTGCTTGAAGAAATGGATAAGCTAGATGCTTTTTCAGAAGAGGAGTTGAGCTTTGAGAGGAAGTGTATAATATGTCTGAAAGATGAAGTCTCTATTGTTTTCCTGCCTTGTGCACACCAAGTTATGTGTGCCAGCTGCGGTGATGACTATGGTAAAAGGGGTAAAGCTACATGCCCATGTTGCCGGGTCCTTATTGAACAAAAGATCCGGGTTTTCGGAGCAAGTTCATAG 2175 0.4575 MGCTVKDKHIRSNRRTRSAKTDTGTCCHQDRAAISEVTLEPAVNTLKMYPGLNSGQIPIPISVPNPNPNSNPNAEENGGWGYCTEEQLEEILLRNLEFLYNEAVAKLVSSGYDEDVAVEAILRSGHCYGSMDVSQNIVRNSLEYLQSVDCGGNADESEVVFSDLRQLEEYSLAAMICMLQQVRPHLSKGDAMWCLLMSDLHVGRASAMEIPVLPSPANANGCSGPACNSVDTSNHGAGVMPPALCRFHGGWGFGNSGASELPVDGFFSYGSELTLQRDIECPKRFNLSPTMKSLLRRNVAAFAAGFRANSKQLQTQAKASSGALLNNAAPVASGVEVPAEQSGDSQNLKNQDIINTIMDKFRDLNLEGNLEFETEDQRDEVVVTLLHQVKRLEKQVKERKEWAHKKAVQAATKLSNDLTQLKLLRMEREDNQRLKKGKQTLEDSTMKRLSEMENALRKASGQVDRANAAVRRLEVENAEIRAEMEASKLRASESAKNCMKVEKRERKCKKKLAAWDKQKAKLEEEISEEKEKILELQRNLAQIKQTQKETELKWREEIRAKEEASALVDEERRSKEAAESNNKRKLEALRLKIEIDFQRHKDDLLRLEQELSRLKPSAQSTDQPNRTSPSPARESSDKSNPEGETIAALLEEMDKLDAFSEEELSFERKCIICLKDEVSIVFLPCAHQVMCASCGDDYGKRGKATCPCCRVLIEQKIRVFGASS* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00253 724 ProSiteProfiles Zinc finger RING-type profile. 670 710 IPR001841 -
Pte12g00253 724 MobiDBLite consensus disorder prediction 613 642 - -
Pte12g00253 724 SUPERFAMILY RING/U-box 669 716 - -
Pte12g00253 724 Coils Coil 449 490 - -
Pte12g00253 724 PANTHER OS05G0141500 PROTEIN 1 719 IPR046934 -
Pte12g00253 724 MobiDBLite consensus disorder prediction 1 24 - -
Pte12g00253 724 Coils Coil 561 588 - -
Pte12g00253 724 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 657 721 IPR013083 -
Pte12g00253 724 MobiDBLite consensus disorder prediction 613 636 - -
Pte12g00253 724 Pfam Zinc finger, C3HC4 type (RING finger) 667 715 - -
Pte12g00253 724 CDD RING-HC_MIP1-like 665 719 - -
Pte12g00253 724 Pfam Family of unknown function (DUF6592) 95 208 IPR046527 -
Pte12g00253 724 Coils Coil 505 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00253 Pte-Chr12 2024968 2030164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00253 648 720 C3H Transcription Factor Family AT1G73950 36.709 2.53e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00253 - - qsa:O6P43_024474 974.926