Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00242 ATGCGGAAATCACTTTCTGAGGTTAAACTCAAGAATATCTGGCAGCAAGTAGTTCACAAGGCATTCAATTCAGGGACAAGTGGCAACTCAAAAACACTTAAACATGTCAAGGAATCCCTAGTTTCCATCCTGCAATTCCGGAAAGAAGATGAAGTACATGACAAAGTAAATTGTGAGAATGCACCTGGAGTTGATGAAATGGAGTATAATCCATCAGCTGGCAATGAGAAATACCCTGCCCCTTCAACCCCCAAAATAGAGCACAGTGCCCGGTCACATGATGATGGAAATTGTCACGATCAGAAGAATTGCTCAATGGAGAAAGAGGGTGGAGGGCTAGATGGCAAATCTAAATCCTTCGACACTAGATTTACCACTAGAAGCAATGAAGCTTCCTTGACAGAAAAGTTACCTATATGTCTGGACAAGACTATGATCAGGGAGGACGAGGACATCGATGATGCTAGAAAGAGTGAAAATGAAACATCTCTTCATTCAGAACATGCGAAGGATCTCAGTAGCATTACCATTATTCATTCATCTCCAAGCAAAGCATCCATTCTTAGTGACTCAAAATGGATCAAGGCTAATCGGAAAAAGGCAAAGGTAAACTGGACACCTGATCTGCACGAGAAGTTTGTCCAGGCAGTGAAACAGTTAGGTGTTGATCAAGCGATTCCTTCTCGCATACTAGAACTAATGAAAGTGGAAGGTTTGACAAGACATAATGTCGCAAGCCATCTGCAGAAATATAGAATGCATAAGAGACATATCTTGCCCGAGGAAAATGAGCGCAGATGGTTGCACCAAAGGGACCAAAAGCAGAGGTGCCATTATCAACAAAGACCAATAATGCGCTTTCCCCACTACTATCCTAACCAGACACTACCTACTGCACCTGTATATCCAATGTGGGGACAGTCTGTTAGCTACCCACCCAGTATTCAGATGTCACCTGGCTATCCCCCTTGGCAATCACAAGAAAGTTGGGTTTGGAATCCTTCTCCAGAGATCCATGCAGATGCATGGGGGTGCCCAGTAATGCGTCCTTCTCAAAGTGCTTTTTTCCATCCTCAATATCCACTTGGATTTCATAACAAGAATGGGTTTGATTACAGCAGTAGCATGCAACAAAATTCATTTCTGCTTGATCAGACAGAGGAGGTTATTGACAAAGTTGTGAAGGAAGCAATGAGCAAGCCCTGGCGACCCTTACCCTTAGGCCTCAAACCTCCTTCCACTGACAGCGTGCTAGCTGAGCTCTCAAGGAAAGGAATCTCCATCATCCCTCCTCGTACCAATACTAAACTTCTTTGCCTAGACCAAAAATTGTCTGACAACATACAGACTTTGTAA 1356 0.4351 MRKSLSEVKLKNIWQQVVHKAFNSGTSGNSKTLKHVKESLVSILQFRKEDEVHDKVNCENAPGVDEMEYNPSAGNEKYPAPSTPKIEHSARSHDDGNCHDQKNCSMEKEGGGLDGKSKSFDTRFTTRSNEASLTEKLPICLDKTMIREDEDIDDARKSENETSLHSEHAKDLSSITIIHSSPSKASILSDSKWIKANRKKAKVNWTPDLHEKFVQAVKQLGVDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRHILPEENERRWLHQRDQKQRCHYQQRPIMRFPHYYPNQTLPTAPVYPMWGQSVSYPPSIQMSPGYPPWQSQESWVWNPSPEIHADAWGCPVMRPSQSAFFHPQYPLGFHNKNGFDYSSSMQQNSFLLDQTEEVIDKVVKEAMSKPWRPLPLGLKPPSTDSVLAELSRKGISIIPPRTNTKLLCLDQKLSDNIQTL* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00242 451 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 197 256 IPR017930 -
Pte12g00242 451 NCBIfam myb-like DNA-binding domain, SHAQKYF class 200 255 IPR006447 GO:0003677
Pte12g00242 451 FunFam Two-component response regulator 196 259 - -
Pte12g00242 451 Pfam Myb-like DNA-binding domain 202 252 IPR001005 -
Pte12g00242 451 MobiDBLite consensus disorder prediction 87 121 - -
Pte12g00242 451 SUPERFAMILY Homeodomain-like 198 257 IPR009057 -
Pte12g00242 451 Gene3D - 196 258 - -
Pte12g00242 451 MobiDBLite consensus disorder prediction 61 121 - -
Pte12g00242 451 PANTHER TRANSCRIPTION ACTIVATOR GLK1 5 432 IPR044825 GO:0003700|GO:0045893
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00242 Pte-Chr12 1930018 1934065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00242 1 430 Response Regulator Gene Family AT4G18020 40.481 1.03e-72 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pte12g00242 Myb_DNA-binding 3.7e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00242 - - qsa:O6P43_024457 496.123