Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00225 ATGAAATCTAGGTTGAATGAGATTTTCAGAAGTGGGGTGCTGAAACTCTGGGATTCGATCATCAATTGCGTAGAGATGAAGTGCTTCTTACCTTTCAAAGAAAAATTGAAAGGCAAGAAGAGTTCAAATTCTGCTCCCGAATTGAGAAACGAAGACGACAAAGGGGTCAAACCAGAGTTGAACCGTCTGGCCAAGTCATCCGGTTCATTACCATCACCCAGAACCATACCTGAATTGTACAGAGAGAAAGAGGAGAAATTGAGAGTTTTTACTTACCAAGAGCTCAGTGATGCTACCAATGGCTTCAACAGAATCTTAAAAATTGGAGAAGGAGGGTTTGGCAGCGTTTATAAGGGTACCATCAAACCTCCGCGTGGTCGTGGTGATACAATTGTGGTTGCTATAAAAAAGCTAAACAAGTATGGTTTGCAGGGGCATCAACAATGGCTTGCAGAAGTTCAATTTCTTGGTGTGGTTAATCATCCAAATCTGGTGAAACTTCTAGGATACTGTTGTGAGGATGATGAAAGGGGAATCCAAAGGCTTTTGGTGTATGAATTTATGCTTAATAGGAGCCTTGAAGATCATCTGTTCAATCGGAATCTCCCTACTCTGCCATGGAACAAAAGGTTGCAGATTATCATCGGTGTGGCTGAGGGTTTGGCTTATCTACATGGGGAATTGGAGGTTCAGGTGATATATAGAGATTTTAAAACATCTAATGTTCTCTTGGATGAGCACTTCAATCCTAAACTCTCAGATTTCGGTCTTGCTAGGGAAGGCCCTACTGATGATCGAAGTCATGTATCCACGGCACCAGTTGGGACGTATGGATATGCTGCTCCAGAATATGTTGAAACTGGCCGGCTGTCAATCCAGAGTGATCTCTGGAGTTTCGGGGTTGTGCTGTATGAGATCCTCACCGGCCGGCGGGCATTGGAACGAAACCGACCAACAAGTGAGCAGAAGCTTTTGGATTGGGTGAAACAGTATCCAGCTAACACTAACAGGTTCAGCATGATAATGGACCCTCGGCTGAGAAACCAGTATTCCATCAATGCAGCCAGGAAAATTGCAACTCTGGCTGACAGCTGCTTAAACAAGAATCCTAAAGATAGACCTTCAATGGCTCAGGTGGTTGGGACATTGAAGCGAGCGTTACAATACTCTCAAGACTCACTCACTTCTGAACCATCATCAGCATCAACATCTCGGGCTTGGTTGACTCCAAAAACGAAATAG 1242 0.4404 MKSRLNEIFRSGVLKLWDSIINCVEMKCFLPFKEKLKGKKSSNSAPELRNEDDKGVKPELNRLAKSSGSLPSPRTIPELYREKEEKLRVFTYQELSDATNGFNRILKIGEGGFGSVYKGTIKPPRGRGDTIVVAIKKLNKYGLQGHQQWLAEVQFLGVVNHPNLVKLLGYCCEDDERGIQRLLVYEFMLNRSLEDHLFNRNLPTLPWNKRLQIIIGVAEGLAYLHGELEVQVIYRDFKTSNVLLDEHFNPKLSDFGLAREGPTDDRSHVSTAPVGTYGYAAPEYVETGRLSIQSDLWSFGVVLYEILTGRRALERNRPTSEQKLLDWVKQYPANTNRFSMIMDPRLRNQYSINAARKIATLADSCLNKNPKDRPSMAQVVGTLKRALQYSQDSLTSEPSSASTSRAWLTPKTK* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00225 413 ProSiteProfiles Protein kinase domain profile. 102 387 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00225 413 Pfam Protein tyrosine and serine/threonine kinase 107 382 IPR001245 GO:0004672|GO:0006468
Pte12g00225 413 Gene3D Transferase(Phosphotransferase) domain 1 188 405 - -
Pte12g00225 413 MobiDBLite consensus disorder prediction 391 413 - -
Pte12g00225 413 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 188 397 - -
Pte12g00225 413 ProSitePatterns Serine/Threonine protein kinases active-site signature. 232 244 IPR008271 GO:0004672|GO:0006468
Pte12g00225 413 CDD STKc_IRAK 108 385 - -
Pte12g00225 413 ProSitePatterns Protein kinases ATP-binding region signature. 108 137 IPR017441 GO:0005524
Pte12g00225 413 MobiDBLite consensus disorder prediction 39 60 - -
Pte12g00225 413 Gene3D Phosphorylase Kinase; domain 1 82 187 - -
Pte12g00225 413 MobiDBLite consensus disorder prediction 39 75 - -
Pte12g00225 413 SUPERFAMILY Protein kinase-like (PK-like) 85 383 IPR011009 -
Pte12g00225 413 PANTHER OS01G0588500 PROTEIN-RELATED 56 385 - -
Pte12g00225 413 FunFam Serine/threonine-protein kinase BIK1 72 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00225 Pte-Chr12 1797492 1805456 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00225 21 383 Glycoside Hydrolase AT3G07070 40.053 1.15e-87 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Pte12g00225 PK_Tyr_Ser-Thr 9.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00225 - - qsa:O6P43_034016 602.053