Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pte12g00220 ATGGATGAGCGGTATGAGCCATTGAAGGACCTTGGTTCTGGGAATTTTGGAGTGGCTAAACTGGTCAGAGATAAGAATACCAAGGAACTTGTTGCAGTCAAATATATAGAACGAGGAAAAAAGATTGATGGGAATGTTCAGAGGGAGATCATCAACCACAGATCTCTGAGACATCCAAACATCATCAGGTTCAAGGAGGTTCTACTAACTCCTACACATTTAGCCATAGTCATGGAATATGCTGCTGGGGGTGAACTCTTTGAGAGAATAAACAGTGCTGGTCGGTTCAGTGAAGATGAGGCTAGATTCTTTTTCCAGCAGCTAATTTCTGGTGTTAGCTATTGTCATTCCATGGAAATTTGTCACAGGGATTTGAAATTGGAAAACACACTCTTGGATGGAAGTCCCAATCCACGACTTAAGATATGTGACTTTGGTTACTCCAAGTCTGCTTTATTGCACTCTCAGCCCAAATCGACAGTTGGCACTCCTGCTTACATTGCACCTGAGGTTTTGTCTCGCAAAGAATATGATGGGAAGATTGCAGATGTTTGGTCATGTGGGGTGACTCTGTATGTTATGTTGGTGGGATCATATCCTTTCGAGGATCCCGAAGATCATAGAAATTTTCGGAAGACTATCAATAGAATAATGAGTGCTCAATACTCCATACCCGATTATGTACGAATTTCAGCAGATTGTAAACAACTTCTTTCTTGCATCTTTGTTGCCAATCCTGCCAAGGTAACTCTCATAGTTTAA 762 0.4147 MDERYEPLKDLGSGNFGVAKLVRDKNTKELVAVKYIERGKKIDGNVQREIINHRSLRHPNIIRFKEVLLTPTHLAIVMEYAAGGELFERINSAGRFSEDEARFFFQQLISGVSYCHSMEICHRDLKLENTLLDGSPNPRLKICDFGYSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGSYPFEDPEDHRNFRKTINRIMSAQYSIPDYVRISADCKQLLSCIFVANPAKVTLIV* 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pte12g00220 253 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Pte12g00220 253 ProSiteProfiles Protein kinase domain profile. 5 253 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00220 253 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Pte12g00220 253 SMART serkin_6 5 252 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00220 253 Gene3D Transferase(Phosphotransferase) domain 1 81 249 - -
Pte12g00220 253 SUPERFAMILY Protein kinase-like (PK-like) 3 248 IPR011009 -
Pte12g00220 253 FunFam Serine/threonine-protein kinase SRK2A 81 253 - -
Pte12g00220 253 FunFam Serine/threonine-protein kinase SRK2E 1 80 - -
Pte12g00220 253 PANTHER SERINE/THREONINE KINASE 4 248 - -
Pte12g00220 253 Pfam Protein kinase domain 5 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pte12g00220 253 ProSitePatterns Serine/Threonine protein kinases active-site signature. 120 132 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pte12g00220 Pte-Chr12 1762570 1766221 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pte12g00220 4 246 CBL-interacting serine-threonine protein kinases AT2G26980 41.732 9.44e-61 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Pte12g00220 Pkinase 4.7e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pte12g00220 K14498 - qsa:O6P43_024424 471.855